Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | GTW26_RS26085 | Genome accession | NZ_CP047643 |
| Coordinates | 5537845..5538717 (+) | Length | 290 a.a. |
| NCBI ID | WP_003141356.1 | Uniprot ID | A0A0H2ZGZ1 |
| Organism | Pseudomonas aeruginosa CI27 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5532845..5543717
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTW26_RS26065 (GTW26_26020) | - | 5533388..5534086 (-) | 699 | WP_016254081.1 | hypothetical protein | - |
| GTW26_RS26070 (GTW26_26025) | - | 5534150..5534689 (-) | 540 | WP_003141352.1 | pilin | - |
| GTW26_RS26075 (GTW26_26030) | pilB | 5534918..5536621 (+) | 1704 | WP_003141354.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GTW26_RS26080 (GTW26_26035) | pilC | 5536625..5537842 (+) | 1218 | WP_016254080.1 | type II secretion system F family protein | Machinery gene |
| GTW26_RS26085 (GTW26_26040) | pilD | 5537845..5538717 (+) | 873 | WP_003141356.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| GTW26_RS26090 (GTW26_26045) | coaE | 5538714..5539325 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| GTW26_RS26095 (GTW26_26050) | yacG | 5539322..5539522 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| GTW26_RS26100 (GTW26_26055) | - | 5539559..5539768 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| GTW26_RS26105 (GTW26_26060) | - | 5539874..5540563 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| GTW26_RS26110 (GTW26_26065) | - | 5540560..5541030 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| GTW26_RS26115 (GTW26_26070) | - | 5541027..5541452 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| GTW26_RS26120 (GTW26_26075) | - | 5541585..5542214 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| GTW26_RS26125 (GTW26_26080) | - | 5542211..5542660 (+) | 450 | WP_003141357.1 | MOSC domain-containing protein | - |
| GTW26_RS26130 (GTW26_26085) | - | 5542686..5542856 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31813.85 Da Isoelectric Point: 7.7068
>NTDB_id=414824 GTW26_RS26085 WP_003141356.1 5537845..5538717(+) (pilD) [Pseudomonas aeruginosa CI27]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLGDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLGDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=414824 GTW26_RS26085 WP_003141356.1 5537845..5538717(+) (pilD) [Pseudomonas aeruginosa CI27]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAATGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCTGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGGCGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAATGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCTGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGGCGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.017 |
99.655 |
0.548 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |