Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GU336_RS02930 Genome accession   NZ_CP047616
Coordinates   566391..566720 (-) Length   109 a.a.
NCBI ID   WP_163604800.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain Lr_19_5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 561391..571720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU336_RS02900 (GU336_02900) obgE 562438..563757 (+) 1320 WP_096039988.1 GTPase ObgE -
  GU336_RS02905 - 563844..564020 (+) 177 WP_003137484.1 hypothetical protein -
  GU336_RS02910 (GU336_02905) - 564017..565003 (+) 987 WP_167838433.1 PhoH family protein -
  GU336_RS02915 (GU336_02910) - 564996..565454 (+) 459 WP_096039989.1 hypothetical protein -
  GU336_RS02920 (GU336_02915) ybeY 565512..566003 (+) 492 WP_061773786.1 rRNA maturation RNase YbeY -
  GU336_RS02925 (GU336_02920) - 565987..566388 (+) 402 WP_138492265.1 diacylglycerol kinase family protein -
  GU336_RS02930 (GU336_02925) comFC 566391..566720 (-) 330 WP_163604800.1 phosphoribosyltransferase family protein Machinery gene
  GU336_RS02935 (GU336_02930) comFA/cflA 567035..568309 (-) 1275 WP_138492267.1 DEAD/DEAH box helicase Machinery gene
  GU336_RS02940 (GU336_02935) - 568353..568976 (+) 624 WP_096039992.1 YigZ family protein -
  GU336_RS02950 (GU336_02945) - 569797..570660 (+) 864 WP_138492268.1 S1 RNA-binding domain-containing protein -
  GU336_RS02955 (GU336_02950) msrA 570657..571178 (+) 522 WP_167838434.1 peptide-methionine (S)-S-oxide reductase MsrA -
  GU336_RS02960 (GU336_02955) - 571175..571384 (+) 210 WP_061773793.1 YozE family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12126.92 Da        Isoelectric Point: 10.4051

>NTDB_id=414641 GU336_RS02930 WP_163604800.1 566391..566720(-) (comFC) [Lactococcus raffinolactis strain Lr_19_5]
MKGQTLVPVPVSPERLQSRGFNQVTGFLSSAKLPYLELLTKEETRHQSHKNRAERLASENPFHLKKNVTIPEHVVLVDDI
FTTGTTLKNGASILKNAGCAHVSTFSLFR

Nucleotide


Download         Length: 330 bp        

>NTDB_id=414641 GU336_RS02930 WP_163604800.1 566391..566720(-) (comFC) [Lactococcus raffinolactis strain Lr_19_5]
TTGAAAGGCCAAACTCTCGTACCTGTGCCAGTTTCACCTGAACGACTACAAAGTAGAGGCTTTAATCAAGTCACGGGATT
TTTAAGTAGCGCTAAACTTCCTTATCTTGAACTCCTGACCAAAGAAGAAACGCGGCACCAATCTCACAAAAATCGTGCAG
AGCGCTTAGCTTCTGAAAATCCTTTTCATCTCAAGAAAAATGTTACCATCCCTGAGCACGTGGTTCTCGTAGATGATATT
TTCACGACAGGGACGACCCTTAAAAATGGTGCAAGCATATTAAAAAACGCAGGCTGCGCCCACGTTTCTACTTTTTCATT
ATTTCGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(60-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

53.846

95.413

0.514
  comFC/cflB Streptococcus mitis NCTC 12261

50.926

99.083

0.505
  comFC/cflB Streptococcus mitis SK321

50

99.083

0.495
  comFC/cflB Streptococcus pneumoniae TIGR4

49.074

99.083

0.486
  comFC/cflB Streptococcus pneumoniae R6

49.074

99.083

0.486
  comFC/cflB Streptococcus pneumoniae Rx1

49.074

99.083

0.486
  comFC/cflB Streptococcus pneumoniae D39

49.074

99.083

0.486
  comFC Bacillus subtilis subsp. subtilis str. 168

40

96.33

0.385
  comFC Latilactobacillus sakei subsp. sakei 23K

37.615

100

0.376
  comFC Legionella pneumophila strain ERS1305867

34.188

100

0.367
  comFC Legionella pneumophila str. Paris

34.188

100

0.367

Multiple sequence alignment