Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GU336_RS02780 Genome accession   NZ_CP047616
Coordinates   534127..535992 (+) Length   621 a.a.
NCBI ID   WP_167838422.1    Uniprot ID   A0A6H0UAK2
Organism   Lactococcus raffinolactis strain Lr_19_5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 529127..540992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU336_RS02755 (GU336_02755) - 529260..530027 (+) 768 Protein_520 sugar-binding protein -
  GU336_RS02760 (GU336_02760) - 530033..530245 (+) 213 WP_245334375.1 hypothetical protein -
  GU336_RS02765 (GU336_02765) - 530488..531678 (+) 1191 WP_167838419.1 iron-containing alcohol dehydrogenase -
  GU336_RS02770 (GU336_02770) - 531829..532284 (+) 456 WP_167838420.1 MarR family transcriptional regulator -
  GU336_RS02775 (GU336_02775) rcrP 532355..534127 (+) 1773 WP_167838421.1 ABC transporter ATP-binding protein Regulator
  GU336_RS02780 (GU336_02780) rcrQ 534127..535992 (+) 1866 WP_167838422.1 ABC transporter ATP-binding protein Regulator
  GU336_RS02785 (GU336_02785) - 536128..536874 (+) 747 WP_167838423.1 tyrosine-protein phosphatase -
  GU336_RS02790 (GU336_02790) - 537148..537555 (+) 408 WP_096039976.1 hypothetical protein -
  GU336_RS02795 (GU336_02795) - 537620..537877 (+) 258 WP_167838424.1 hypothetical protein -
  GU336_RS02800 (GU336_02800) - 537937..538887 (+) 951 WP_068164079.1 IS30 family transposase -
  GU336_RS02805 (GU336_02805) - 539096..539461 (+) 366 WP_096039977.1 hypothetical protein -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 67605.81 Da        Isoelectric Point: 5.4023

>NTDB_id=414636 GU336_RS02780 WP_167838422.1 534127..535992(+) (rcrQ) [Lactococcus raffinolactis strain Lr_19_5]
MPTTKNTPKKSNGGGFGPGRGLGRGGEKPKDVKKALGDLAKYVKPWYPAILVAAIAACGGAYLTIIGPDRLSEITNKIMA
GLRASFIPKGMPGHGDIDMKAITAIGVTLIAFYLGSALLSYTQGFIMATVTQRTSKKLRQDISTKINKLPLRYFDSHPYG
DTLSRVTNDVDAISQALNQSVGSLVSALTLFFGTIIMMFKTNVEMSLTAIATTAIGFGLMMLIMTKSQRFFNAQQNGLGE
VNGFVEEVYTGHNIVRVSNADKSKQDEFDEINERLYNSVWESQFLSGLMMPLMQFIGNFGYGAVCLVGAILTIDGKIEFG
VIVAFMIYIRLFTQPLTQIAQAVTSMQSAGAASERIFTFLAEPELEDETGKATTLVNPKGAVEFKNVHFGYNADRVIIND
FSAKAEPGQKIAIVGPTGAGKSTMVNLLMRFYDIDSGQIIIDGTPIKEVTREAVHDQFSMVLQDTWLFEGTVKENLIYNQ
CDITDEQVVAAAKAVGVDHFINTLPNGYDSVLKDADELSVGERQLLTIARALLKNAPMLILDEATSSVDTRTEELIQKAM
DKLMEGRTSFVIAHRLSTIKNADLILVMKDGDIIESGNHEALLAQGGFYADLYNSQFESVA

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=414636 GU336_RS02780 WP_167838422.1 534127..535992(+) (rcrQ) [Lactococcus raffinolactis strain Lr_19_5]
ATGCCGACAACAAAAAATACACCTAAAAAATCTAATGGCGGTGGCTTTGGACCAGGTCGTGGCTTAGGTCGCGGAGGTGA
AAAACCCAAAGACGTCAAAAAAGCCTTGGGCGACTTAGCGAAATATGTCAAACCTTGGTATCCGGCGATTCTTGTCGCAG
CCATCGCTGCCTGTGGTGGTGCTTATCTGACCATTATCGGTCCTGATCGCCTATCTGAAATTACTAATAAAATCATGGCT
GGTTTGAGAGCCAGCTTCATCCCCAAAGGCATGCCAGGTCATGGCGACATTGATATGAAAGCCATTACGGCGATTGGTGT
GACTTTGATTGCCTTCTACTTGGGTTCAGCGCTTTTGAGTTACACCCAAGGTTTCATCATGGCGACTGTAACCCAACGGA
CATCTAAGAAACTACGTCAAGATATTTCGACGAAAATTAACAAATTACCTTTGCGCTACTTTGATAGTCATCCTTATGGC
GATACTTTGTCGCGCGTGACAAATGACGTGGATGCGATCAGCCAAGCCCTTAACCAATCCGTTGGGAGTTTGGTTTCAGC
CTTGACGCTCTTCTTTGGCACGATCATCATGATGTTTAAAACCAACGTTGAAATGAGTCTGACTGCTATTGCCACAACGG
CGATCGGCTTTGGCTTAATGATGCTCATCATGACTAAGTCACAAAGATTCTTTAACGCCCAACAAAACGGCCTCGGCGAG
GTTAATGGTTTTGTGGAAGAAGTTTACACGGGTCATAATATCGTGAGAGTGTCCAATGCGGACAAGTCTAAACAAGATGA
GTTCGATGAAATCAATGAACGCCTTTATAACTCAGTTTGGGAATCTCAATTTCTGTCAGGCTTGATGATGCCACTCATGC
AATTCATCGGTAACTTTGGTTACGGTGCTGTCTGTTTGGTTGGGGCGATTTTAACCATCGATGGTAAAATCGAGTTTGGC
GTGATCGTAGCCTTCATGATTTATATTCGTTTGTTCACCCAACCCTTGACACAAATCGCCCAAGCGGTGACCTCAATGCA
ATCAGCAGGCGCAGCTTCTGAGCGGATTTTCACATTCCTTGCGGAACCTGAATTAGAAGACGAAACGGGTAAGGCAACGA
CATTGGTCAACCCTAAAGGGGCTGTTGAATTTAAAAACGTTCATTTCGGCTATAACGCTGATCGTGTCATCATCAATGAC
TTCTCAGCCAAAGCTGAACCTGGTCAGAAGATTGCCATCGTTGGGCCTACGGGCGCTGGTAAATCAACCATGGTCAACTT
GCTCATGCGTTTCTACGATATTGATTCTGGTCAAATCATCATTGATGGGACACCGATTAAAGAGGTGACGCGTGAAGCGG
TCCACGATCAGTTTTCAATGGTCTTACAAGACACGTGGTTGTTTGAAGGGACAGTGAAAGAAAACTTGATCTATAATCAA
TGTGATATCACGGATGAACAGGTTGTTGCTGCTGCTAAGGCAGTTGGTGTCGATCATTTTATCAATACCTTACCAAATGG
CTATGACTCAGTCTTGAAAGACGCTGATGAATTATCAGTTGGTGAACGTCAGCTCTTAACCATTGCCCGTGCGCTCTTGA
AAAATGCACCAATGTTGATTCTTGATGAAGCGACATCATCAGTAGATACGCGGACTGAAGAATTGATCCAAAAAGCCATG
GATAAACTCATGGAAGGTCGGACAAGTTTTGTCATTGCCCACAGACTGTCTACCATCAAAAATGCTGACTTGATTCTCGT
CATGAAAGACGGCGATATCATCGAAAGTGGCAACCACGAAGCCTTGCTTGCACAAGGTGGCTTCTATGCTGATTTGTATA
ATTCACAGTTTGAAAGCGTGGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(399-546)

ABC transporter transmembrane region (ABC_membrane)

(82-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0UAK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.169

95.008

0.572

Multiple sequence alignment