Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GU336_RS02775 Genome accession   NZ_CP047616
Coordinates   532355..534127 (+) Length   590 a.a.
NCBI ID   WP_167838421.1    Uniprot ID   A0A6H0UAE4
Organism   Lactococcus raffinolactis strain Lr_19_5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 527355..539127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU336_RS02750 (GU336_02750) - 527805..529022 (+) 1218 WP_167838418.1 response regulator -
  GU336_RS02755 (GU336_02755) - 529260..530027 (+) 768 Protein_520 sugar-binding protein -
  GU336_RS02760 (GU336_02760) - 530033..530245 (+) 213 WP_245334375.1 hypothetical protein -
  GU336_RS02765 (GU336_02765) - 530488..531678 (+) 1191 WP_167838419.1 iron-containing alcohol dehydrogenase -
  GU336_RS02770 (GU336_02770) - 531829..532284 (+) 456 WP_167838420.1 MarR family transcriptional regulator -
  GU336_RS02775 (GU336_02775) rcrP 532355..534127 (+) 1773 WP_167838421.1 ABC transporter ATP-binding protein Regulator
  GU336_RS02780 (GU336_02780) rcrQ 534127..535992 (+) 1866 WP_167838422.1 ABC transporter ATP-binding protein Regulator
  GU336_RS02785 (GU336_02785) - 536128..536874 (+) 747 WP_167838423.1 tyrosine-protein phosphatase -
  GU336_RS02790 (GU336_02790) - 537148..537555 (+) 408 WP_096039976.1 hypothetical protein -
  GU336_RS02795 (GU336_02795) - 537620..537877 (+) 258 WP_167838424.1 hypothetical protein -
  GU336_RS02800 (GU336_02800) - 537937..538887 (+) 951 WP_068164079.1 IS30 family transposase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64915.53 Da        Isoelectric Point: 9.0892

>NTDB_id=414635 GU336_RS02775 WP_167838421.1 532355..534127(+) (rcrP) [Lactococcus raffinolactis strain Lr_19_5]
MFKILKKITGKELRYVGISLIFIVIQVYLDLKLPDYMSKVTKLIQEKGTTVSQIFDEGRWMVLCAFGSLVAAVIVGFFAA
KVAAGLSRTLRHDVYHQVSEYSMAEINQFSTASLITRSTNDITQVQMIVAMGLQLSIKAPITAVWAIMKIANKSWEWTTA
LGAAVLFLLVMISIIVTLAMPRFKIIQKLTDKLNSVTRENLTGIRVVRAYNAQKYQTDKFEKANDDITSTNLFIQRAMAF
MMPMMSLVSSGLSVAVYLIGATIIKAASVGTPANSPRINLFSDMVVFTSYGMQVVMAFMMLTMIFIMFPRANVSAGRINE
VIDTASSIKNGTKDGSAAKEVGTVEFKNVYFQYADASEHVLEGVSFKANKGETVAFIGSTGSGKSTLINLIPRYYDVTAG
QVLVDGVNVKEYTEEALHDKMGFIPQKPVMFNGTIRSNLAFGTNAHGDMSDEDLMAAARIAQAEEFILKNPEGLNAEVSQ
GGLNLSGGQKQRLAIARAIARKPEILVFDDSFSALDYKTDRVLRDTLKRETAETTKLIVAQRIGTIIDADQIIVLDKGKV
VGRGTHDELMAINEVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=414635 GU336_RS02775 WP_167838421.1 532355..534127(+) (rcrP) [Lactococcus raffinolactis strain Lr_19_5]
ATGTTTAAAATCTTAAAAAAAATCACTGGAAAAGAGCTCAGATACGTCGGTATCAGCCTGATTTTCATTGTCATCCAGGT
GTATTTAGACCTTAAATTACCGGATTACATGAGCAAAGTGACCAAATTAATCCAAGAAAAAGGCACAACCGTGTCGCAAA
TCTTTGATGAAGGTCGCTGGATGGTCCTCTGTGCCTTTGGCTCACTCGTCGCCGCAGTCATTGTCGGCTTCTTTGCTGCC
AAGGTAGCCGCTGGCTTATCACGGACGCTGCGTCATGATGTCTACCATCAAGTCTCAGAGTATTCAATGGCTGAAATCAA
CCAGTTTTCAACTGCCAGCCTGATTACCCGTTCAACCAACGACATTACCCAAGTCCAAATGATCGTGGCTATGGGGCTAC
AACTCAGTATCAAAGCTCCGATCACTGCCGTTTGGGCCATCATGAAAATTGCCAACAAATCATGGGAATGGACGACCGCT
TTAGGTGCTGCTGTTCTCTTCCTTCTCGTCATGATCAGTATTATCGTGACGCTTGCCATGCCTCGTTTCAAGATTATCCA
AAAATTAACGGATAAACTAAATTCCGTGACCCGTGAAAACCTGACTGGGATTCGTGTGGTCCGTGCTTATAACGCTCAAA
AATATCAAACCGATAAATTTGAAAAAGCCAACGACGATATTACGTCAACCAACCTCTTCATTCAACGCGCTATGGCCTTC
ATGATGCCCATGATGTCTCTTGTGTCATCTGGCCTGTCAGTTGCCGTTTACTTGATTGGTGCGACCATTATTAAAGCTGC
AAGCGTTGGGACACCTGCTAATTCACCTCGGATCAATCTCTTTTCAGACATGGTCGTGTTCACGTCTTATGGAATGCAAG
TTGTGATGGCCTTTATGATGTTGACCATGATTTTCATCATGTTCCCGCGTGCCAATGTCTCTGCTGGTCGGATTAATGAA
GTCATCGATACCGCCTCAAGCATTAAAAACGGGACAAAAGATGGTTCAGCAGCTAAAGAAGTTGGGACTGTCGAGTTTAA
GAACGTCTATTTCCAATACGCTGATGCCTCTGAACACGTTCTTGAAGGTGTTTCTTTCAAGGCCAATAAAGGCGAAACGG
TTGCCTTCATCGGCTCAACCGGTTCTGGTAAATCAACATTAATCAACCTCATCCCGCGTTACTATGATGTGACAGCCGGT
CAAGTCTTGGTTGATGGCGTCAATGTTAAGGAATATACAGAAGAAGCCTTGCACGATAAAATGGGCTTCATCCCGCAAAA
ACCAGTGATGTTTAACGGAACGATTCGGTCAAACTTGGCCTTTGGGACTAATGCTCATGGTGACATGAGTGATGAAGACT
TAATGGCAGCTGCACGGATCGCCCAAGCTGAAGAATTTATACTGAAAAACCCTGAAGGCTTAAACGCTGAAGTATCTCAG
GGTGGTCTTAACCTGTCCGGTGGTCAAAAGCAACGGCTAGCGATTGCTCGTGCCATTGCCCGCAAGCCTGAAATTCTCGT
CTTTGATGACAGTTTTTCAGCTTTGGACTATAAGACTGACCGTGTCTTACGCGATACCTTGAAACGTGAAACAGCAGAAA
CGACGAAACTGATTGTTGCCCAACGGATTGGCACGATTATCGATGCCGATCAAATTATTGTTTTGGATAAAGGGAAAGTC
GTGGGTCGTGGGACACATGATGAGTTGATGGCTATCAATGAAGTCTATCAAGAAATCGCCTATTCACAACTGTCTAAGGA
GGAATTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-511)

ABC transporter transmembrane region (ABC_membrane)

(17-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0UAE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.184

100

0.559

Multiple sequence alignment