Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Ami3637_RS10635 Genome accession   NZ_CP047591
Coordinates   2249359..2250747 (+) Length   462 a.a.
NCBI ID   WP_162362562.1    Uniprot ID   A0A6P1MP75
Organism   Aminipila terrae strain CBA3637     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2244359..2255747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ami3637_RS10620 (Ami3637_10585) ansA 2245196..2246209 (+) 1014 WP_243157987.1 asparaginase -
  Ami3637_RS10625 (Ami3637_10590) - 2246356..2247078 (+) 723 WP_162362560.1 AAA family ATPase -
  Ami3637_RS10630 (Ami3637_10595) - 2247253..2249211 (+) 1959 WP_162362561.1 translation factor GTPase family protein -
  Ami3637_RS10635 (Ami3637_10600) radA 2249359..2250747 (+) 1389 WP_162362562.1 DNA repair protein RadA Machinery gene
  Ami3637_RS10640 (Ami3637_10605) - 2250830..2252185 (-) 1356 WP_162362563.1 APC family permease -
  Ami3637_RS10645 (Ami3637_10610) - 2252413..2253084 (+) 672 WP_162362564.1 response regulator transcription factor -
  Ami3637_RS10650 (Ami3637_10615) - 2253087..2254517 (+) 1431 WP_162362565.1 HAMP domain-containing sensor histidine kinase -
  Ami3637_RS10655 (Ami3637_10620) - 2254655..2255128 (+) 474 WP_162362566.1 CarD family transcriptional regulator -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50116.69 Da        Isoelectric Point: 6.5003

>NTDB_id=414371 Ami3637_RS10635 WP_162362562.1 2249359..2250747(+) (radA) [Aminipila terrae strain CBA3637]
MKKAKTIFVCQECGYETAKWMGQCICGAWNSMVEEKVIPVNENDSRSRTTANISGNARQRVKASRLSEVQSGNFSRIDTG
IGELNRVLGGGLVKGSLTLISGEPGIGKSTIIIQAASNIAGQYGKVLYVSGEESEEQIKMRGDRVCKGNIQNLFLLAETN
MENIINVTEELKPEFIIIDSIQTMYSPELDSAPGSVSQVRACGNELMKMGKVQNIPIFIVAHVTKSGELAGPKIVEHLVD
CVLNFSGERNQELRILRCFKNRFGTTSEIGAFEMMEEGLVEIENLSKTFLEGMEEGAEGAIATAVYEGTRPLLLEIQALT
APTNIGFARRTAIGIDNNRLNMLLAVLERKAGLSLINQDVYVNVVGGLRPDGTSTDLAVALAIYSSFKGKTASGKTLALG
EIGLTGDLRSVQNCEKIVREASRMGFSRIILPKKNELAIKEPPQNVKLVGVSNIRDAISCFS

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=414371 Ami3637_RS10635 WP_162362562.1 2249359..2250747(+) (radA) [Aminipila terrae strain CBA3637]
ATGAAAAAGGCAAAGACTATATTTGTATGCCAGGAATGTGGTTACGAGACTGCTAAATGGATGGGACAGTGCATCTGTGG
AGCCTGGAACTCCATGGTAGAAGAAAAAGTAATCCCTGTGAATGAAAATGACAGCAGAAGCAGAACTACGGCTAATATAA
GCGGAAATGCCAGGCAAAGAGTGAAAGCATCCAGATTATCAGAGGTCCAGTCGGGTAATTTTTCAAGAATTGATACCGGC
ATAGGAGAGTTAAACAGGGTTTTAGGAGGAGGACTGGTCAAAGGTTCTCTTACGCTCATATCAGGAGAACCTGGTATAGG
AAAGTCTACAATTATAATTCAGGCAGCCTCAAACATCGCCGGACAATATGGGAAGGTACTATATGTTTCTGGAGAAGAGT
CGGAAGAACAGATTAAAATGCGGGGAGACAGAGTATGTAAAGGCAATATACAGAATCTGTTTTTACTGGCTGAAACCAAT
ATGGAAAATATCATAAATGTCACAGAGGAATTAAAGCCGGAATTTATTATTATAGATTCCATACAAACTATGTATTCACC
AGAACTGGATTCTGCACCAGGAAGTGTTTCCCAGGTGCGGGCTTGCGGAAACGAATTGATGAAAATGGGAAAGGTACAAA
ATATTCCAATATTTATAGTGGCTCATGTGACGAAATCAGGAGAACTTGCAGGCCCTAAAATAGTGGAACACTTAGTGGAC
TGTGTTCTTAATTTTTCTGGGGAGAGAAACCAGGAGTTAAGGATACTACGATGCTTTAAAAATAGATTTGGCACTACAAG
TGAAATCGGGGCTTTCGAGATGATGGAAGAAGGTCTGGTTGAAATTGAAAACTTATCTAAAACTTTTCTTGAGGGAATGG
AGGAAGGCGCGGAAGGAGCTATAGCTACTGCAGTTTATGAAGGCACAAGGCCTTTGCTTTTAGAAATTCAGGCGTTAACA
GCCCCTACAAATATTGGTTTTGCCAGAAGAACTGCCATTGGCATTGATAATAACCGGCTGAACATGCTGCTGGCAGTGCT
TGAACGAAAAGCGGGTCTGTCTCTCATAAACCAGGATGTATACGTCAATGTTGTAGGGGGATTAAGGCCAGACGGTACGT
CTACGGATCTGGCCGTGGCCCTTGCTATATATTCTTCCTTTAAAGGTAAGACTGCGTCAGGGAAAACCCTGGCACTGGGT
GAAATCGGACTGACCGGAGATTTGAGATCTGTTCAGAACTGTGAGAAGATTGTAAGAGAAGCAAGCAGAATGGGATTTTC
AAGAATAATTTTACCGAAAAAAAATGAACTTGCCATTAAAGAGCCTCCGCAAAATGTAAAACTTGTGGGAGTGTCAAATA
TCAGAGATGCTATTTCATGTTTTTCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-435)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

AAA domain (AAA_25)

(67-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1MP75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.024

99.784

0.489
  radA Streptococcus mitis NCTC 12261

48.696

99.567

0.485
  radA Streptococcus mitis SK321

48.696

99.567

0.485
  radA Streptococcus pneumoniae Rx1

48.478

99.567

0.483
  radA Streptococcus pneumoniae D39

48.478

99.567

0.483
  radA Streptococcus pneumoniae R6

48.478

99.567

0.483
  radA Streptococcus pneumoniae TIGR4

48.478

99.567

0.483

Multiple sequence alignment