Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HMPREF0833_RS05475 Genome accession   NC_015678
Coordinates   1150101..1151861 (-) Length   586 a.a.
NCBI ID   WP_013904086.1    Uniprot ID   -
Organism   Streptococcus parasanguinis ATCC 15912     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1145101..1156861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS05450 (HMPREF0833_11107) - 1145535..1146275 (-) 741 WP_003015140.1 MerR family transcriptional regulator -
  HMPREF0833_RS05455 (HMPREF0833_11108) manA 1146404..1147348 (-) 945 WP_041818357.1 mannose-6-phosphate isomerase, class I -
  HMPREF0833_RS05460 (HMPREF0833_11109) queG 1147463..1148602 (+) 1140 WP_041818358.1 tRNA epoxyqueuosine(34) reductase QueG -
  HMPREF0833_RS05465 (HMPREF0833_11110) - 1148624..1149250 (-) 627 WP_013904083.1 GNAT family N-acetyltransferase -
  HMPREF0833_RS05470 (HMPREF0833_11111) - 1149334..1149849 (-) 516 WP_041818498.1 phosphatase PAP2 family protein -
  HMPREF0833_RS05475 (HMPREF0833_11113) rcrQ 1150101..1151861 (-) 1761 WP_013904086.1 ABC transporter ATP-binding protein Regulator
  HMPREF0833_RS05480 (HMPREF0833_11114) rcrP 1151854..1153656 (-) 1803 WP_013904087.1 ABC transporter ATP-binding protein Regulator
  HMPREF0833_RS05485 (HMPREF0833_11115) - 1153653..1154099 (-) 447 WP_041818359.1 MarR family winged helix-turn-helix transcriptional regulator -
  HMPREF0833_RS05490 (HMPREF0833_11116) - 1154235..1154645 (-) 411 WP_013904089.1 peptide deformylase -
  HMPREF0833_RS05495 (HMPREF0833_11117) scrK 1154893..1155792 (-) 900 WP_003016958.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65176.85 Da        Isoelectric Point: 5.3207

>NTDB_id=41385 HMPREF0833_RS05475 WP_013904086.1 1150101..1151861(-) (rcrQ) [Streptococcus parasanguinis ATCC 15912]
MHKTKQKTSLWSQLSPYLKGFHLFLGIAILFSIVSSVITVIGPDKLKEITDTITKGMGGAIDIDKITSIALTLAILYGVG
ALVSYSSSFIISTMIQRFAERLRNAIAEKINRVPLQYFDSHEQGDTLSRVTNDVDLMTQSFNQSLVQMVSSIVLLIGSIF
MMFKTDWHLALTAILSVFGGFALSSIIMVKSQPLFKQQQDNLAKVSGYVEEIYSGHNVVISYNGRHQAKDHFDAINQDLY
HSMWKSQFFSGIMMPLMQFVGNFGYVMVCIVGAVLTINGDITIGTIVAFMTYVRIFTQPIGQMAQGITQLQSASAAMGRV
FEFLDEEEMEDESQKTRQLETPEGHVTFEHVRFGYSPDKTIIHDFTAEAKPGQKVAIVGPTGAGKTTMVNLLMRFYDIQA
GKIAIDGVDTKSISREEVHDAFSMVLQDTWLFEGTIRENLVFNQTDISDEAVEAATRAVGVHHFIRTLPNGYDTVLDDSV
TLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQ
GNHQELMSQNGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=41385 HMPREF0833_RS05475 WP_013904086.1 1150101..1151861(-) (rcrQ) [Streptococcus parasanguinis ATCC 15912]
ATGCATAAGACAAAACAAAAAACATCCCTTTGGAGCCAACTTTCTCCCTATTTGAAGGGCTTCCACCTATTTTTGGGAAT
TGCTATCCTCTTTTCGATCGTATCGAGTGTAATCACGGTTATTGGACCGGATAAGTTAAAAGAAATTACAGATACCATTA
CAAAAGGGATGGGAGGCGCCATTGATATTGATAAGATCACTTCGATTGCCCTGACCTTAGCCATCCTTTATGGAGTTGGA
GCACTGGTGTCCTACAGCAGTAGTTTCATTATCTCAACCATGATTCAGCGCTTTGCAGAACGCTTGCGCAATGCCATTGC
TGAGAAGATCAATCGCGTGCCCCTCCAATATTTTGATAGCCATGAACAAGGAGATACCTTGTCTCGTGTGACCAATGACG
TGGATTTGATGACCCAATCCTTTAACCAAAGCTTGGTTCAAATGGTCTCCTCCATCGTCTTATTGATCGGCTCCATTTTT
ATGATGTTTAAGACGGACTGGCATTTAGCTTTGACCGCCATCCTTTCTGTTTTTGGTGGCTTTGCTCTTTCTAGCATTAT
TATGGTTAAGAGTCAGCCTTTGTTTAAACAGCAACAAGATAATCTTGCCAAAGTTTCAGGCTATGTCGAAGAAATCTATA
GTGGACACAATGTCGTCATTTCCTACAATGGCCGTCATCAGGCCAAAGATCATTTTGATGCCATCAACCAAGATTTGTAC
CATAGCATGTGGAAATCCCAATTCTTCTCAGGAATCATGATGCCCTTGATGCAGTTTGTAGGGAATTTTGGTTATGTCAT
GGTCTGTATCGTTGGGGCTGTCCTCACCATTAATGGGGATATTACCATCGGGACCATTGTGGCCTTTATGACCTATGTCC
GCATCTTTACCCAACCAATTGGTCAAATGGCGCAAGGAATTACCCAATTGCAATCAGCTAGTGCTGCTATGGGGCGTGTC
TTTGAATTCTTAGACGAAGAAGAAATGGAAGATGAATCCCAAAAAACACGTCAATTGGAAACACCCGAAGGTCATGTCAC
CTTTGAGCATGTGCGCTTTGGTTATTCACCAGATAAGACTATTATCCATGACTTTACTGCTGAAGCCAAACCGGGGCAAA
AAGTGGCTATTGTTGGTCCGACAGGTGCTGGTAAGACCACTATGGTCAATCTCTTGATGCGCTTTTATGACATTCAAGCT
GGTAAAATTGCCATCGATGGTGTGGATACTAAGTCCATAAGCCGCGAAGAAGTTCATGATGCCTTTTCGATGGTCTTACA
AGATACCTGGCTCTTTGAAGGGACCATTCGGGAAAATCTTGTCTTCAATCAAACCGATATTTCAGATGAAGCAGTCGAAG
CGGCAACCCGAGCGGTTGGGGTCCATCACTTTATTCGGACCTTGCCGAATGGCTATGATACTGTATTAGATGATTCAGTG
ACCTTGTCCGTTGGTCAAAAGCAACTCTTGACCATTGCGCGTGCCCTCTTGAAGGACGCCCCGCTTCTTATCTTGGATGA
AGCAACCTCATCTGTCGATACCCGTACAGAAGAGTTGATTCAAAAAGCCATGGACAAACTCATGGAAGGCCGAACCTCCT
TTGTTATTGCCCATCGCTTGTCCACTATCCGCAATGCGGATCTGATTCTTGTGATGAAAGATGGAAATATTATCGAGCAG
GGTAACCACCAAGAACTCATGAGCCAAAATGGTTTCTATGCTGATCTCTATAATAGCCAATTCACAGAAGAAGTGGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-299)

ABC transporter (ABC_tran)

(364-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

77.625

99.147

0.77

Multiple sequence alignment