Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HMPREF0833_RS05480 Genome accession   NC_015678
Coordinates   1151854..1153656 (-) Length   600 a.a.
NCBI ID   WP_013904087.1    Uniprot ID   F8DJX3
Organism   Streptococcus parasanguinis ATCC 15912     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1146854..1158656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS05460 (HMPREF0833_11109) queG 1147463..1148602 (+) 1140 WP_041818358.1 tRNA epoxyqueuosine(34) reductase QueG -
  HMPREF0833_RS05465 (HMPREF0833_11110) - 1148624..1149250 (-) 627 WP_013904083.1 GNAT family N-acetyltransferase -
  HMPREF0833_RS05470 (HMPREF0833_11111) - 1149334..1149849 (-) 516 WP_041818498.1 phosphatase PAP2 family protein -
  HMPREF0833_RS05475 (HMPREF0833_11113) rcrQ 1150101..1151861 (-) 1761 WP_013904086.1 ABC transporter ATP-binding protein Regulator
  HMPREF0833_RS05480 (HMPREF0833_11114) rcrP 1151854..1153656 (-) 1803 WP_013904087.1 ABC transporter ATP-binding protein Regulator
  HMPREF0833_RS05485 (HMPREF0833_11115) - 1153653..1154099 (-) 447 WP_041818359.1 MarR family winged helix-turn-helix transcriptional regulator -
  HMPREF0833_RS05490 (HMPREF0833_11116) - 1154235..1154645 (-) 411 WP_013904089.1 peptide deformylase -
  HMPREF0833_RS05495 (HMPREF0833_11117) scrK 1154893..1155792 (-) 900 WP_003016958.1 fructokinase ScrK -
  HMPREF0833_RS05500 (HMPREF0833_11118) - 1155951..1157843 (-) 1893 WP_013904090.1 sucrose-specific PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66516.20 Da        Isoelectric Point: 7.4634

>NTDB_id=41386 HMPREF0833_RS05480 WP_013904087.1 1151854..1153656(-) (rcrP) [Streptococcus parasanguinis ATCC 15912]
MINMFRRLTAKEWGMIALSTVFICLAVWMDLKTPEYLSDITTLLAKEGTKVSDIMDPGSKMLLFSFGSFLMAVFVGFLAS
RVAASFTTRLRGEIFHQVMDYSDAEIKKFSVPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAIWALTKIWGKSDAWTTS
VGIAVLMVLILLSVLVLIAFPRQQKVQGLTDDLNATTRESLTGVRVVRAYNAEAYQNEKFQAENKGLTRLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGAHLINDIAMPKDPTKIFTSPALADRTKVFSDMITFSSYAMQVVIGFMMMVAILIILPRAL
VSAKRINQVLALEPSVDFPSESNTESGEKGSVEFQDVSFRYGRTSRAVIEHVTFSAQKGQTVAFIGSTGSGKSTLVNLIP
RFYDATEGKILVDGVNVKGYSHQELNNKVGYIPQKAVLFSDTIRSNMEFGESSQGKLEDEAIWKALELAQAKEFVAAKEK
GLDTEVAQGGSNFSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRQALKEELADTTRLIVAQRISTIMDADLI
LVLDQGKVVGQGTHKELLATNEVYQEIAYSQLSKEELEHA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=41386 HMPREF0833_RS05480 WP_013904087.1 1151854..1153656(-) (rcrP) [Streptococcus parasanguinis ATCC 15912]
ATGATCAATATGTTTCGGCGGTTAACCGCCAAAGAATGGGGCATGATTGCCCTTAGTACGGTCTTTATCTGTCTGGCTGT
TTGGATGGATTTAAAGACTCCTGAATACTTATCCGATATCACGACCCTCTTAGCCAAGGAGGGGACCAAGGTTTCGGATA
TCATGGATCCGGGAAGCAAGATGTTGCTCTTCTCTTTTGGAAGCTTTTTGATGGCAGTTTTTGTGGGCTTTTTAGCTTCA
AGAGTCGCTGCCAGCTTTACGACGCGACTTCGAGGAGAGATTTTTCATCAAGTGATGGATTACTCTGATGCCGAGATCAA
GAAATTCTCCGTTCCCTCTCTTTTGACTCGGACGACCAATGATTTGACCCAGTTACAAATCATGATCGTCATGGGGATGC
AAGTCGTGACGCGTGGTCCCATTATGGCAATTTGGGCTTTGACCAAGATTTGGGGCAAGAGCGATGCTTGGACAACGTCT
GTTGGGATAGCAGTCTTGATGGTCTTGATTCTGCTTTCTGTTCTGGTTCTGATTGCCTTTCCGCGCCAGCAAAAGGTTCA
GGGCTTGACCGATGACTTGAATGCGACGACACGGGAGAGTTTGACTGGGGTGCGGGTCGTTCGTGCTTACAATGCGGAAG
CTTATCAAAATGAAAAATTCCAGGCTGAAAACAAGGGCTTAACCCGTCTAAATCTCTTTGTTTACCGTTTGATGTCTTTG
ATGAACCCTGTCATGACAGTGGTATCAAGTGGGTTGACCCTTGCTATCTACTGGATTGGGGCGCACTTGATCAATGATAT
CGCCATGCCAAAAGATCCTACAAAGATCTTCACCAGTCCTGCATTAGCGGATCGGACCAAGGTCTTCTCCGATATGATCA
CCTTCTCCTCTTACGCCATGCAGGTTGTCATTGGCTTTATGATGATGGTGGCCATCTTGATTATTCTTCCTCGTGCTTTG
GTATCCGCAAAACGGATTAATCAGGTCTTGGCTCTAGAGCCGTCTGTTGATTTTCCATCTGAGTCCAATACTGAGTCTGG
AGAAAAAGGAAGTGTAGAATTTCAAGATGTTTCCTTTCGCTATGGACGGACTTCTCGTGCTGTGATTGAACACGTGACCT
TCTCAGCTCAGAAAGGACAAACTGTTGCCTTCATCGGATCAACTGGTTCTGGGAAATCCACTTTGGTCAATTTAATCCCA
CGTTTTTACGATGCGACAGAAGGAAAGATCTTAGTGGATGGCGTCAATGTCAAGGGCTATAGCCACCAAGAATTGAACAA
TAAAGTCGGCTACATTCCCCAAAAAGCAGTGCTCTTTAGCGACACGATTCGCTCCAATATGGAATTTGGAGAAAGTAGTC
AAGGAAAATTAGAGGATGAAGCCATCTGGAAAGCTCTTGAATTGGCCCAAGCCAAAGAGTTTGTGGCCGCAAAAGAAAAA
GGCTTGGATACAGAAGTAGCGCAAGGAGGAAGCAACTTCTCTGGCGGTCAACGGCAACGCTTGGCCATTGCACGGGCCCT
GGCTCGCAAGCCCGAGATCCTCATCTTTGATGATTCCTTCTCAGCCCTGGATTACAAAACGGATCGGATTCTGCGACAAG
CCTTGAAAGAAGAGCTTGCAGATACGACTAGATTGATCGTTGCCCAACGGATTTCGACTATTATGGATGCAGATTTGATT
TTGGTCTTGGATCAAGGGAAGGTCGTCGGTCAAGGTACCCACAAGGAATTGCTTGCGACCAATGAAGTCTATCAAGAAAT
TGCCTATTCACAATTATCTAAGGAGGAGTTGGAACATGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-519)

ABC transporter transmembrane region (ABC_membrane)

(18-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8DJX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

77.667

100

0.777

Multiple sequence alignment