Detailed information NTG0413824

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: IXO792_RS07665
• Genome accession: NZ_CP047493
• Coordinates: 1583380..1584831 (-)
• Length: 483 a.a.
• NCBI ID: WP_171970756.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzae strain IXO792
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1563852..1589682	1583380..1584831	within	0

Gene organization within MGE regions

Location: 1563852..1589682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IXO792_RS07575 (IXO792_07540)	-	1563852..1567634 (+)	3783	WP_263115017.1	RHS repeat-associated core domain-containing protein	-
IXO792_RS07580 (IXO792_07545)	-	1567634..1568122 (+)	489	WP_128415435.1	DUF6714 family protein	-
IXO792_RS07585 (IXO792_07550)	-	1568174..1569142 (+)	969	WP_011258802.1	IS5-like element ISXo1 family transposase	-
IXO792_RS07590 (IXO792_07555)	-	1569342..1570088 (+)	747	Protein_1441	IS701 family transposase	-
IXO792_RS07595 (IXO792_07560)	-	1570623..1570624 (-)	2	WP_094187728.1	IS5 family transposase	-
IXO792_RS07600 (IXO792_07565)	-	1570938..1571513 (+)	576	Protein_1443	IS701-like element ISXo15 family transposase	-
IXO792_RS07605 (IXO792_07570)	-	1571972..1573291 (-)	1320	WP_115801881.1	IS701-like element ISXo15 family transposase	-
IXO792_RS07610 (IXO792_07575)	coaE	1573362..1573970 (-)	609	WP_011258357.1	dephospho-CoA kinase	-
IXO792_RS07615 (IXO792_07580)	-	1573984..1574847 (-)	864	WP_011258358.1	A24 family peptidase	-
IXO792_RS07620 (IXO792_07585)	pilC	1574854..1576113 (-)	1260	WP_011408067.1	type II secretion system F family protein	Machinery gene
IXO792_RS07625 (IXO792_07590)	pilA2	1576468..1576893 (+)	426	WP_011408068.1	pilin	Machinery gene
IXO792_RS07630 (IXO792_07595)	-	1577028..1578617 (+)	1590	WP_011408069.1	phosphoethanolamine transferase	-
IXO792_RS07635 (IXO792_07600)	-	1578688..1579257 (+)	570	WP_229001934.1	hypothetical protein	-
IXO792_RS07640 (IXO792_07605)	-	1579227..1580753 (+)	1527	WP_075239559.1	hypothetical protein	-
IXO792_RS07645 (IXO792_07610)	pilB	1580788..1582521 (+)	1734	WP_011408072.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IXO792_RS07650 (IXO792_07615)	-	1582530..1582790 (-)	261	WP_011408073.1	Fic family protein	-
IXO792_RS07655	-	1582878..1583039 (-)	162	WP_153296778.1	hypothetical protein	-
IXO792_RS07660 (IXO792_07620)	-	1583101..1583307 (-)	207	WP_027703281.1	YhfG family protein	-
IXO792_RS07665 (IXO792_07625)	pilR	1583380..1584831 (-)	1452	WP_171970756.1	sigma-54 dependent transcriptional regulator	Regulator
IXO792_RS07670 (IXO792_07630)	-	1585102..1586715 (-)	1614	WP_011258366.1	HAMP domain-containing sensor histidine kinase	-
IXO792_RS07675 (IXO792_07635)	sucC	1586949..1588118 (+)	1170	WP_011258367.1	ADP-forming succinate--CoA ligase subunit beta	-
IXO792_RS07680 (IXO792_07640)	sucD	1588143..1589018 (+)	876	WP_012444445.1	succinate--CoA ligase subunit alpha	-
IXO792_RS07685 (IXO792_07645)	-	1589191..1589682 (+)	492	WP_075239558.1	hypothetical protein	-

Sequence

Protein

• Length: 483 a.a.
• Molecular weight: 52446.18 Da
• Isoelectric Point: 6.8290

>NTDB_id=413824 IXO792_RS07665 WP_171970756.1 1583380..1584831(-) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO792]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide

• Length: 1452 bp

>NTDB_id=413824 IXO792_RS07665 WP_171970756.1 1583380..1584831(-) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO792]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (440-480)

• Sigma-54 interaction domain (Sigma54_activat) (161-326)

• Response regulator receiver domain (Response_reg) (28-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.987	95.652	0.602
pilR	Acinetobacter baumannii strain A118	48.268	95.652	0.462