Detailed information NTG0413763

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GTN25_RS13715
• Genome accession: NZ_CP047488
• Coordinates: 2853690..2854490 (-)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain P91
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2848690..2859490

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTN25_RS13695 (GTN25_13565)	dksA	2849270..2849725 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
GTN25_RS13700 (GTN25_13570)	sfsA	2849888..2850604 (-)	717	WP_146720547.1	DNA/RNA nuclease SfsA	-
GTN25_RS13705 (GTN25_13575)	thpR	2850604..2851140 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
GTN25_RS13710 (GTN25_13580)	hrpB	2851213..2853642 (+)	2430	WP_146720548.1	ATP-dependent helicase HrpB	-
GTN25_RS13715 (GTN25_13585)	pilD	2853690..2854490 (-)	801	WP_002888947.1	A24 family peptidase	Machinery gene
GTN25_RS13720 (GTN25_13590)	-	2854487..2855233 (-)	747	WP_146720549.1	type II secretion system protein N	-
GTN25_RS13725 (GTN25_13595)	-	2855223..2855708 (-)	486	WP_004151943.1	type II secretion system protein M	-
GTN25_RS13730 (GTN25_13600)	gspL	2855701..2856894 (-)	1194	WP_146720550.1	type II secretion system protein GspL	-
GTN25_RS13735 (GTN25_13605)	gspK	2856881..2857867 (-)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
GTN25_RS13740 (GTN25_13610)	gspJ	2857864..2858460 (-)	597	WP_146720551.1	type II secretion system minor pseudopilin GspJ	-
GTN25_RS13745 (GTN25_13615)	gspI	2858457..2858822 (-)	366	WP_146720552.1	type II secretion system minor pseudopilin GspI	-
GTN25_RS13750 (GTN25_13620)	gspH	2858819..2859334 (-)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=413763 GTN25_RS13715 WP_002888947.1 2853690..2854490(-) (pilD) [Klebsiella pneumoniae strain P91]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=413763 GTN25_RS13715 WP_002888947.1 2853690..2854490(-) (pilD) [Klebsiella pneumoniae strain P91]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGTGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425