Detailed information NTG0413724

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GTU61_RS09560
• Genome accession: NZ_CP047487
• Coordinates: 1533779..1534579 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain P66
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1528779..1539579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTU61_RS09525 (GTU61_09315)	gspH	1528935..1529450 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
GTU61_RS09530 (GTU61_09320)	gspI	1529447..1529812 (+)	366	WP_146720552.1	type II secretion system minor pseudopilin GspI	-
GTU61_RS09535 (GTU61_09325)	gspJ	1529809..1530405 (+)	597	WP_146720551.1	type II secretion system minor pseudopilin GspJ	-
GTU61_RS09540 (GTU61_09330)	gspK	1530402..1531388 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
GTU61_RS09545 (GTU61_09335)	gspL	1531375..1532568 (+)	1194	WP_146720550.1	type II secretion system protein GspL	-
GTU61_RS09550 (GTU61_09340)	-	1532561..1533046 (+)	486	WP_004151943.1	type II secretion system protein M	-
GTU61_RS09555 (GTU61_09345)	-	1533036..1533782 (+)	747	WP_146720549.1	type II secretion system protein N	-
GTU61_RS09560 (GTU61_09350)	pilD	1533779..1534579 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
GTU61_RS09565 (GTU61_09355)	hrpB	1534627..1537056 (-)	2430	WP_146720548.1	ATP-dependent helicase HrpB	-
GTU61_RS09570 (GTU61_09360)	thpR	1537129..1537665 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
GTU61_RS09575 (GTU61_09365)	sfsA	1537665..1538381 (+)	717	WP_146720547.1	DNA/RNA nuclease SfsA	-
GTU61_RS09580 (GTU61_09370)	dksA	1538544..1538999 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=413724 GTU61_RS09560 WP_002888947.1 1533779..1534579(+) (pilD) [Klebsiella pneumoniae strain P66]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=413724 GTU61_RS09560 WP_002888947.1 1533779..1534579(+) (pilD) [Klebsiella pneumoniae strain P66]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGTGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425