Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GTW28_RS18325 Genome accession   NZ_CP047485
Coordinates   3537069..3537758 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain BJQ0005     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3532069..3542758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS18290 (GTW28_18290) flgN 3532249..3532731 (-) 483 WP_003227999.1 flagellar protein FlgN -
  GTW28_RS18295 (GTW28_18295) flgM 3532747..3533013 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  GTW28_RS18300 (GTW28_18300) yvyF 3533094..3533513 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GTW28_RS18305 (GTW28_18305) comFC 3533587..3534309 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  GTW28_RS18310 (GTW28_18310) comFB 3534273..3534569 (-) 297 WP_003227989.1 late competence protein ComFB -
  GTW28_RS18315 (GTW28_18315) comFA 3534629..3536020 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  GTW28_RS18320 (GTW28_18320) fakBA 3536126..3536971 (-) 846 WP_003244125.1 DegV family protein -
  GTW28_RS18325 (GTW28_18325) degU 3537069..3537758 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GTW28_RS18330 (GTW28_18330) degS 3537841..3538998 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GTW28_RS18335 (GTW28_18335) yvyE 3539215..3539868 (+) 654 WP_003227979.1 YigZ family protein -
  GTW28_RS18340 (GTW28_18340) tagV 3539868..3541043 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  GTW28_RS18345 (GTW28_18345) tagO 3541116..3542192 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=413710 GTW28_RS18325 WP_003219701.1 3537069..3537758(-) (degU) [Bacillus subtilis strain BJQ0005]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=413710 GTW28_RS18325 WP_003219701.1 3537069..3537758(-) (degU) [Bacillus subtilis strain BJQ0005]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment