Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GTW28_RS18305 Genome accession   NZ_CP047485
Coordinates   3533587..3534309 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain BJQ0005     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3528587..3539309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS18270 (GTW28_18270) fliW 3528726..3529157 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  GTW28_RS18275 (GTW28_18275) yviE 3529178..3529753 (-) 576 WP_003243053.1 DUF6470 family protein -
  GTW28_RS18280 (GTW28_18280) flgL 3529800..3530696 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  GTW28_RS18285 (GTW28_18285) flgK 3530707..3532230 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  GTW28_RS18290 (GTW28_18290) flgN 3532249..3532731 (-) 483 WP_003227999.1 flagellar protein FlgN -
  GTW28_RS18295 (GTW28_18295) flgM 3532747..3533013 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  GTW28_RS18300 (GTW28_18300) yvyF 3533094..3533513 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GTW28_RS18305 (GTW28_18305) comFC 3533587..3534309 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  GTW28_RS18310 (GTW28_18310) comFB 3534273..3534569 (-) 297 WP_003227989.1 late competence protein ComFB -
  GTW28_RS18315 (GTW28_18315) comFA 3534629..3536020 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  GTW28_RS18320 (GTW28_18320) fakBA 3536126..3536971 (-) 846 WP_003244125.1 DegV family protein -
  GTW28_RS18325 (GTW28_18325) degU 3537069..3537758 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GTW28_RS18330 (GTW28_18330) degS 3537841..3538998 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=413708 GTW28_RS18305 WP_003227991.1 3533587..3534309(-) (comFC) [Bacillus subtilis strain BJQ0005]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=413708 GTW28_RS18305 WP_003227991.1 3533587..3534309(-) (comFC) [Bacillus subtilis strain BJQ0005]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment