Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GT360_RS12080 Genome accession   NZ_CP047475
Coordinates   2606702..2607355 (+) Length   217 a.a.
NCBI ID   WP_164649121.1    Uniprot ID   A0A7Z2T4L3
Organism   Vibrio astriarenae strain HN897     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2601702..2612355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT360_RS12065 (GT360_12075) - 2602324..2602773 (+) 450 WP_164649118.1 DNA polymerase III subunit chi -
  GT360_RS12070 (GT360_12080) - 2602871..2605744 (+) 2874 WP_164649119.1 valine--tRNA ligase -
  GT360_RS12075 (GT360_12085) hpt 2605846..2606373 (-) 528 WP_164649120.1 hypoxanthine phosphoribosyltransferase -
  GT360_RS12080 (GT360_12090) opaR 2606702..2607355 (+) 654 WP_164649121.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GT360_RS12085 (GT360_12095) lpdA 2607461..2608885 (-) 1425 WP_164649122.1 dihydrolipoyl dehydrogenase -
  GT360_RS12090 (GT360_12100) aceF 2609108..2611015 (-) 1908 WP_164649123.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25060.51 Da        Isoelectric Point: 5.6033

>NTDB_id=413616 GT360_RS12080 WP_164649121.1 2606702..2607355(+) (opaR) [Vibrio astriarenae strain HN897]
MDSPTQKQDVGLTDKPKSRPRTRLSPQKRREQLMEIAMEVFACRGIGRGGHADIAEIANVSVATVFNYFPTREDLVDDVL
QFVERKYSNFLSDSIDLDRHARENLKCITGAIIKMVQEDCSWMKVWFEWSASTRSDVWPLFLSSNQTNLKLLQHMFKVAM
ERDEICDEHDPSHIASLFHGILYSLFIQGNRIEEAGELNTLADSYLNMLCIYKHEQQ

Nucleotide


Download         Length: 654 bp        

>NTDB_id=413616 GT360_RS12080 WP_164649121.1 2606702..2607355(+) (opaR) [Vibrio astriarenae strain HN897]
ATGGACTCACCTACTCAAAAACAAGATGTAGGCTTAACGGACAAACCTAAATCTAGACCTAGAACTCGCTTATCGCCACA
AAAACGTCGTGAGCAGTTAATGGAAATTGCAATGGAAGTATTTGCCTGTCGTGGCATCGGGCGTGGTGGTCATGCTGACA
TAGCAGAGATCGCTAACGTTTCTGTTGCGACTGTATTCAACTACTTCCCTACTCGAGAAGACCTAGTCGATGACGTACTG
CAATTTGTCGAACGAAAATACTCTAATTTTCTATCCGACAGTATCGACCTCGACAGGCACGCTAGAGAAAACCTCAAGTG
CATTACTGGCGCTATTATTAAAATGGTGCAGGAAGACTGTAGCTGGATGAAAGTCTGGTTTGAATGGAGTGCATCTACAC
GTAGTGATGTGTGGCCACTGTTCTTATCCAGCAATCAAACCAATCTAAAACTATTGCAGCACATGTTCAAAGTGGCGATG
GAGCGTGATGAGATCTGTGATGAGCATGACCCTAGCCACATCGCTTCCCTCTTCCACGGCATCCTATACTCACTCTTCAT
TCAAGGTAATCGGATTGAAGAGGCGGGAGAACTCAATACACTTGCAGACAGTTATTTAAATATGCTCTGTATTTACAAGC
ATGAGCAGCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(34-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2T4L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

67.98

93.548

0.636
  hapR Vibrio cholerae C6706

67.677

91.244

0.618
  hapR Vibrio cholerae strain A1552

67.677

91.244

0.618

Multiple sequence alignment