Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GT360_RS08905 Genome accession   NZ_CP047475
Coordinates   1890350..1891849 (+) Length   499 a.a.
NCBI ID   WP_164648520.1    Uniprot ID   A0A7Z2T3J4
Organism   Vibrio astriarenae strain HN897     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1885350..1896849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT360_RS08880 (GT360_08890) - 1885459..1886292 (+) 834 WP_164648517.1 OmpA family protein -
  GT360_RS22050 (GT360_08895) - 1886279..1887674 (+) 1396 Protein_1704 SLBB domain-containing protein -
  GT360_RS22055 (GT360_08900) - 1887782..1889194 (+) 1413 Protein_1705 SLBB domain-containing protein -
  GT360_RS08895 (GT360_08905) - 1889194..1889883 (+) 690 WP_164648518.1 CpsD/CapB family tyrosine-protein kinase -
  GT360_RS08900 (GT360_08910) - 1889913..1890272 (+) 360 WP_164648519.1 Hpt domain-containing protein -
  GT360_RS08905 (GT360_08915) luxO 1890350..1891849 (+) 1500 WP_164648520.1 sigma-54-dependent transcriptional regulator Regulator
  GT360_RS08910 (GT360_08920) - 1891875..1892933 (+) 1059 WP_204274524.1 glycosyltransferase family 4 protein -
  GT360_RS08915 (GT360_08925) speA 1893136..1895049 (+) 1914 WP_164648521.1 arginine decarboxylase -
  GT360_RS08920 (GT360_08930) speB 1895051..1895968 (+) 918 WP_164648522.1 agmatinase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55942.99 Da        Isoelectric Point: 5.0388

>NTDB_id=413612 GT360_RS08905 WP_164648520.1 1890350..1891849(+) (luxO) [Vibrio astriarenae strain HN897]
MRPKVLLVEDSTSLAILYQQYVKDEPYDMFHVETGREAKAFIEKQLPQLVILDLKLPDTSGEEILEWIVENEFPISVVIA
TAHGSVDIAVNLIQIGADDFLEKPIQADRLKTSVRLHLKRAKLETLVNKMETEFDRTNFHGFIGSSLQMQAVYKTIESAA
PTSASVFVHGESGTGKEVCAEAIHQQSSRANKPFVAINCGAIPKDLMESEIFGHVKGAFTGATTDRKGAAMQANGGTLFL
DELCEMELEMQKKLLRFLQLGTFTPLGGSREIKVDCRIICATNRDALKEVTEGRFREDLYYRVHVIPIDMPPLRERGNDI
VTLANHFVKLYAKQDKKKFKGLSKDVEKYFLSYEWPGNVRQLQNIMRNIVVLNDGDYVEMSMLPPPLNTPMAATKTVSET
TAHQPAAIVPQPVYVEPEPHAPVYVDEAPQASPVEPVAVSSPTQPQEIRPMWQVEREAIQNAIEYCDGNVLNAAVLLDLS
PSTVYRKKQQWEQEEQSES

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=413612 GT360_RS08905 WP_164648520.1 1890350..1891849(+) (luxO) [Vibrio astriarenae strain HN897]
ATGAGACCCAAAGTTCTCTTGGTGGAAGACTCAACTTCACTGGCTATTCTCTACCAACAGTACGTCAAAGACGAACCCTA
CGATATGTTTCACGTTGAAACTGGACGCGAAGCAAAGGCTTTCATCGAGAAGCAACTGCCGCAACTTGTGATACTTGATC
TCAAATTGCCCGATACGTCAGGTGAAGAAATCTTAGAGTGGATCGTCGAGAATGAATTTCCCATCTCCGTGGTAATAGCG
ACAGCTCACGGCTCGGTTGATATCGCCGTGAATCTCATCCAAATCGGCGCTGATGATTTCCTTGAAAAGCCCATTCAAGC
TGACAGACTAAAAACCTCGGTTCGGCTTCATCTCAAGCGCGCTAAACTCGAAACTCTCGTCAACAAGATGGAGACGGAGT
TCGACCGAACTAACTTCCATGGATTTATCGGTTCGAGTTTACAGATGCAAGCCGTCTACAAAACCATTGAGTCTGCAGCC
CCAACGTCTGCCAGTGTATTCGTACATGGTGAAAGTGGTACAGGTAAAGAAGTGTGCGCCGAGGCCATCCACCAGCAAAG
TAGCCGTGCTAACAAGCCTTTTGTCGCCATCAACTGTGGTGCTATTCCTAAAGACCTGATGGAAAGCGAGATCTTCGGAC
ATGTAAAGGGCGCTTTCACTGGTGCAACAACAGACCGTAAAGGCGCAGCAATGCAGGCCAATGGGGGGACTCTTTTCCTC
GATGAGCTTTGTGAAATGGAATTGGAGATGCAGAAAAAGCTGCTGCGTTTTTTACAACTCGGTACATTCACACCGTTGGG
GGGTAGCAGAGAGATCAAAGTTGATTGCCGAATCATCTGTGCAACGAACCGAGACGCACTAAAAGAAGTTACTGAGGGGC
GTTTTAGAGAAGACTTGTATTACCGTGTTCACGTTATTCCAATCGATATGCCGCCTTTAAGAGAGCGCGGTAATGATATT
GTGACTCTGGCTAATCATTTCGTTAAGTTGTATGCCAAACAAGATAAGAAGAAATTCAAAGGCCTAAGTAAAGACGTTGA
GAAATACTTCTTAAGTTACGAATGGCCAGGAAATGTTCGCCAACTGCAAAATATAATGCGCAATATTGTCGTGCTCAATG
ACGGTGACTACGTAGAGATGTCGATGTTGCCTCCTCCTCTAAATACACCTATGGCTGCTACCAAAACCGTGTCTGAGACG
ACAGCTCATCAACCAGCGGCCATAGTACCACAACCTGTGTATGTTGAGCCTGAGCCGCACGCGCCAGTGTATGTCGACGA
AGCGCCACAAGCGAGTCCAGTGGAACCAGTGGCAGTCAGCTCACCGACGCAACCACAAGAGATACGCCCGATGTGGCAAG
TGGAAAGAGAAGCGATTCAAAATGCGATTGAGTATTGTGACGGTAACGTTCTCAACGCAGCGGTTTTACTCGACTTGAGC
CCATCAACAGTGTATCGAAAGAAACAGCAATGGGAACAAGAAGAACAAAGCGAGAGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(451-487)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2T3J4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.897

97.595

0.487

Multiple sequence alignment