Detailed information NTG0413611

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GT360_RS07580
• Genome accession: NZ_CP047475
• Coordinates: 1585570..1586997 (+)
• Length: 475 a.a.
• NCBI ID: WP_164648283.1
• Uniprot ID: A0A7Z2T2Y4
• Organism: Vibrio astriarenae strain HN897
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1580570..1591997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GT360_RS07570 (GT360_07580)	-	1582923..1584356 (+)	1434	WP_164648281.1	efflux transporter outer membrane subunit	-
GT360_RS07575 (GT360_07585)	-	1584416..1585348 (-)	933	WP_164648282.1	DUF3179 domain-containing protein	-
GT360_RS07580 (GT360_07590)	sbcB	1585570..1586997 (+)	1428	WP_164648283.1	exodeoxyribonuclease I	Machinery gene
GT360_RS07585 (GT360_07595)	-	1587010..1587387 (+)	378	WP_338062477.1	CidA/LrgA family protein	-
GT360_RS07590 (GT360_07600)	-	1587391..1588071 (+)	681	WP_164648284.1	LrgB family protein	-
GT360_RS07595 (GT360_07605)	cdd	1588213..1589100 (+)	888	WP_164648285.1	cytidine deaminase	-
GT360_RS07600 (GT360_07610)	-	1589598..1590074 (-)	477	WP_164648286.1	response regulator	-
GT360_RS07605 (GT360_07615)	-	1590091..1591509 (-)	1419	WP_164648287.1	SLC13 family permease	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 54802.01 Da
• Isoelectric Point: 5.0145

>NTDB_id=413611 GT360_RS07580 WP_164648283.1 1585570..1586997(+) (sbcB) [Vibrio astriarenae strain HN897]
MPADNQPTFFFFDYETWGTSPALDRPSQFAGVRTDENFNIIGEPLVIYCQLPSDYLPSPEAALITGITPQKANAEGLPEP
EFIRRIHEELSKPNTTSLGYNSIRFDDEVTRHTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPDGINWPENDEGYP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKIKTAQPKLFDFFLQYRHKRKLNELIDIVEMKPLMHVSGMLGRDCQY
TSWIVPVAWHPTNKNAVIVVDLAQDVSPVLEMDSDSLRERLYTKRSELADDELPVPIKLIHLNKCPILAPAKTLTAENAA
NIGINREQCLANLALLRQHPEIREKLLSLYQQERDYSDENKDVDAMLYDGFFSPADRAAMDIILSQPPEALGSLDISFDD
GRIKPLLFRYRARHYPWTLTETEQQRWMSHCRDYFETRLPDYTLNLENLAHEHETDEHKMRVLKSVYEYVSKLVS

Nucleotide

• Length: 1428 bp

>NTDB_id=413611 GT360_RS07580 WP_164648283.1 1585570..1586997(+) (sbcB) [Vibrio astriarenae strain HN897]
ATGCCCGCAGATAACCAACCGACTTTTTTCTTCTTCGACTACGAAACTTGGGGCACTAGCCCTGCTCTTGACAGACCGAG
TCAATTTGCCGGTGTCCGTACCGATGAAAACTTTAACATCATCGGTGAGCCACTGGTTATCTATTGTCAGTTGCCATCCG
ACTATCTGCCCTCTCCTGAAGCTGCGCTGATCACAGGCATCACACCGCAAAAGGCAAATGCTGAGGGACTTCCAGAGCCT
GAGTTCATCCGCCGTATTCATGAAGAATTGTCTAAACCGAACACAACAAGCTTAGGCTACAACAGTATTCGTTTCGATGA
CGAAGTGACACGTCATACCTGTTACCGTAACTTTCTAGACCCATACGCATGGAGTTGGCAAAACGGTAATTCTCGTTGGG
ACTTGCTTGATGTGATGCGAGCTTGTCATGCCCTTCGTCCTGACGGAATCAATTGGCCTGAAAATGACGAAGGCTACCCA
AGCTTTAAACTTGAACATCTTTCAGTTGCCAATGGCATCGAACATAGCAACGCCCACGATGCGATGGCTGATGTGATTGC
GACGATTGAGATGGCGAAAAAAATAAAAACGGCGCAACCCAAGTTATTCGACTTTTTCTTGCAATATCGTCACAAGCGTA
AGCTCAATGAGCTTATTGATATCGTTGAGATGAAACCATTGATGCACGTTAGCGGCATGCTGGGACGTGATTGTCAGTAC
ACCAGTTGGATTGTTCCGGTGGCATGGCACCCTACCAATAAAAACGCCGTAATCGTGGTGGATTTAGCCCAGGATGTATC
TCCGGTTCTTGAGATGGACTCAGACAGCTTAAGAGAGCGTTTATATACAAAACGTTCTGAACTTGCTGACGACGAATTGC
CCGTTCCAATCAAGCTCATCCACCTCAATAAATGCCCTATTCTCGCACCAGCAAAAACACTGACTGCCGAAAATGCGGCA
AATATCGGAATTAACCGCGAGCAGTGTCTTGCAAACCTCGCACTATTGAGACAGCATCCAGAAATTCGTGAAAAGCTGTT
GTCGCTGTATCAGCAAGAACGTGACTATTCTGATGAGAATAAAGATGTTGATGCGATGCTCTACGATGGCTTCTTTAGCC
CTGCAGATCGTGCCGCTATGGACATCATTCTTAGCCAACCACCTGAAGCGCTTGGCAGCTTAGACATCTCTTTTGATGAT
GGGCGAATTAAGCCGTTACTATTCCGCTATCGTGCTCGACATTATCCATGGACACTCACCGAAACAGAACAGCAACGTTG
GATGAGTCATTGTCGCGACTACTTTGAGACTCGCTTACCCGACTACACACTCAACTTAGAAAACTTAGCGCATGAGCATG
AGACTGATGAACACAAAATGCGCGTGTTGAAGTCGGTCTATGAGTACGTTTCTAAATTGGTTAGCTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-471)

• Exonuclease (RNase_T) (11-188)

3D structure

• AlphaFold DB: A0A7Z2T2Y4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	75.738	99.789	0.756