Detailed information
Bioinformatically predicted
Overview
| Name | comFA/cflA | Type | Machinery gene |
| Locus tag | HMPREF0833_RS00015 | Genome accession | NC_015678 |
| Coordinates | 1761..3059 (+) | Length | 432 a.a. |
| NCBI ID | WP_013903170.1 | Uniprot ID | F8DEW1 |
| Organism | Streptococcus parasanguinis ATCC 15912 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1..8059
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF0833_RS00005 (HMPREF0833_10001) | cysK | 17..940 (-) | 924 | WP_003004014.1 | cysteine synthase A | - |
| HMPREF0833_RS00010 (HMPREF0833_10002) | - | 1064..1705 (-) | 642 | WP_013903169.1 | YigZ family protein | - |
| HMPREF0833_RS00015 (HMPREF0833_10003) | comFA/cflA | 1761..3059 (+) | 1299 | WP_013903170.1 | DEAD/DEAH box helicase | Machinery gene |
| HMPREF0833_RS00020 (HMPREF0833_10004) | - | 3056..3721 (+) | 666 | WP_013903171.1 | ComF family protein | - |
| HMPREF0833_RS00025 (HMPREF0833_10005) | hpf | 3803..4345 (+) | 543 | WP_003012610.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
Sequence
Protein
Download Length: 432 a.a. Molecular weight: 49300.35 Da Isoelectric Point: 9.4775
>NTDB_id=41359 HMPREF0833_RS00015 WP_013903170.1 1761..3059(+) (comFA/cflA) [Streptococcus parasanguinis ATCC 15912]
MKIEDSYGRLLTESQMTNDLKKIALELPAIEKQNGRYQCFRCGSLIDQKLWKLSEEVLYCRACIQLGRIRSDQKLYTIAQ
QDFEGQEVLNWKGTLTSYQQEVSDGLIQAVKEGGNALVHAVTGAGKTEMMYQVVATAIKSGQAVCIATPRIDVCIELYGR
MKDDFSCPISLLHGKSEPYFRTPLVIATTHQLLKFFQAFDLLIIDEVDAFPYVDNPILYKAAQNAIKKGGNTLYLTATST
DELDKKVKKKEIIRYSLPRRFHGNPLVVPEIKWVPKIREKIEKGRIPYELLQLIKKQRQTHYPLLIFVSEIELGQQFTEN
LKKYFPKDTVGFVSSQTTDRLRMVEEFRNRALTILVSTTILERGVTFPLVDVFVLESNHKLFTKSALVQISGRVGRSKER
PTGKLLFLSDGITREMKKAIKEIKEMNQEAGF
MKIEDSYGRLLTESQMTNDLKKIALELPAIEKQNGRYQCFRCGSLIDQKLWKLSEEVLYCRACIQLGRIRSDQKLYTIAQ
QDFEGQEVLNWKGTLTSYQQEVSDGLIQAVKEGGNALVHAVTGAGKTEMMYQVVATAIKSGQAVCIATPRIDVCIELYGR
MKDDFSCPISLLHGKSEPYFRTPLVIATTHQLLKFFQAFDLLIIDEVDAFPYVDNPILYKAAQNAIKKGGNTLYLTATST
DELDKKVKKKEIIRYSLPRRFHGNPLVVPEIKWVPKIREKIEKGRIPYELLQLIKKQRQTHYPLLIFVSEIELGQQFTEN
LKKYFPKDTVGFVSSQTTDRLRMVEEFRNRALTILVSTTILERGVTFPLVDVFVLESNHKLFTKSALVQISGRVGRSKER
PTGKLLFLSDGITREMKKAIKEIKEMNQEAGF
Nucleotide
Download Length: 1299 bp
>NTDB_id=41359 HMPREF0833_RS00015 WP_013903170.1 1761..3059(+) (comFA/cflA) [Streptococcus parasanguinis ATCC 15912]
ATGAAGATAGAAGATTCTTATGGAAGACTCTTAACGGAGAGTCAAATGACAAATGATCTAAAAAAAATTGCCCTAGAACT
TCCAGCTATAGAAAAACAGAATGGAAGGTACCAATGCTTTCGATGTGGCAGTTTGATTGATCAAAAACTGTGGAAGTTAA
GTGAAGAGGTACTGTATTGTAGAGCCTGTATCCAATTGGGGAGGATCCGGAGTGATCAAAAACTTTATACTATTGCACAG
CAAGACTTTGAAGGACAGGAGGTGTTAAACTGGAAAGGAACCTTGACTTCCTATCAACAAGAGGTATCCGATGGTCTCAT
CCAAGCAGTTAAGGAAGGGGGAAATGCCTTGGTACATGCTGTGACAGGAGCTGGGAAAACGGAAATGATGTACCAGGTTG
TAGCAACAGCAATCAAGAGTGGACAAGCAGTCTGTATTGCTACCCCAAGAATCGATGTCTGTATCGAACTGTACGGAAGG
ATGAAGGACGATTTTTCCTGCCCCATCTCTTTGCTTCATGGGAAATCGGAACCCTATTTTAGAACGCCTTTGGTAATCGC
AACAACCCACCAATTGCTAAAATTTTTTCAGGCCTTTGATCTCCTTATTATAGATGAGGTAGATGCTTTTCCCTATGTGG
ACAATCCAATCTTATATAAAGCAGCTCAGAATGCGATAAAAAAAGGGGGGAATACGCTATATTTAACAGCAACCTCTACA
GATGAGTTAGATAAAAAGGTCAAGAAAAAAGAAATCATTCGTTATAGCCTTCCAAGAAGGTTTCATGGGAACCCACTAGT
GGTCCCTGAAATAAAATGGGTGCCGAAAATTAGAGAAAAAATAGAAAAAGGAAGAATCCCTTACGAACTATTGCAACTGA
TCAAGAAACAAAGACAGACTCACTACCCATTGTTAATCTTTGTATCTGAAATAGAATTAGGTCAACAATTTACAGAGAAC
TTAAAAAAATACTTTCCTAAAGATACGGTAGGTTTTGTATCCTCACAAACTACAGATCGTCTACGAATGGTAGAGGAGTT
TAGAAACAGAGCATTGACCATCCTAGTCTCGACAACGATTCTAGAAAGGGGAGTAACTTTTCCGCTTGTAGATGTCTTTG
TTTTAGAAAGTAATCACAAATTGTTTACTAAAAGTGCTCTCGTACAAATTTCAGGAAGGGTCGGTCGAAGTAAAGAAAGA
CCAACAGGTAAACTACTTTTTCTATCAGATGGCATAACACGAGAAATGAAAAAAGCGATCAAAGAAATAAAGGAAATGAA
TCAGGAGGCTGGATTTTGA
ATGAAGATAGAAGATTCTTATGGAAGACTCTTAACGGAGAGTCAAATGACAAATGATCTAAAAAAAATTGCCCTAGAACT
TCCAGCTATAGAAAAACAGAATGGAAGGTACCAATGCTTTCGATGTGGCAGTTTGATTGATCAAAAACTGTGGAAGTTAA
GTGAAGAGGTACTGTATTGTAGAGCCTGTATCCAATTGGGGAGGATCCGGAGTGATCAAAAACTTTATACTATTGCACAG
CAAGACTTTGAAGGACAGGAGGTGTTAAACTGGAAAGGAACCTTGACTTCCTATCAACAAGAGGTATCCGATGGTCTCAT
CCAAGCAGTTAAGGAAGGGGGAAATGCCTTGGTACATGCTGTGACAGGAGCTGGGAAAACGGAAATGATGTACCAGGTTG
TAGCAACAGCAATCAAGAGTGGACAAGCAGTCTGTATTGCTACCCCAAGAATCGATGTCTGTATCGAACTGTACGGAAGG
ATGAAGGACGATTTTTCCTGCCCCATCTCTTTGCTTCATGGGAAATCGGAACCCTATTTTAGAACGCCTTTGGTAATCGC
AACAACCCACCAATTGCTAAAATTTTTTCAGGCCTTTGATCTCCTTATTATAGATGAGGTAGATGCTTTTCCCTATGTGG
ACAATCCAATCTTATATAAAGCAGCTCAGAATGCGATAAAAAAAGGGGGGAATACGCTATATTTAACAGCAACCTCTACA
GATGAGTTAGATAAAAAGGTCAAGAAAAAAGAAATCATTCGTTATAGCCTTCCAAGAAGGTTTCATGGGAACCCACTAGT
GGTCCCTGAAATAAAATGGGTGCCGAAAATTAGAGAAAAAATAGAAAAAGGAAGAATCCCTTACGAACTATTGCAACTGA
TCAAGAAACAAAGACAGACTCACTACCCATTGTTAATCTTTGTATCTGAAATAGAATTAGGTCAACAATTTACAGAGAAC
TTAAAAAAATACTTTCCTAAAGATACGGTAGGTTTTGTATCCTCACAAACTACAGATCGTCTACGAATGGTAGAGGAGTT
TAGAAACAGAGCATTGACCATCCTAGTCTCGACAACGATTCTAGAAAGGGGAGTAACTTTTCCGCTTGTAGATGTCTTTG
TTTTAGAAAGTAATCACAAATTGTTTACTAAAAGTGCTCTCGTACAAATTTCAGGAAGGGTCGGTCGAAGTAAAGAAAGA
CCAACAGGTAAACTACTTTTTCTATCAGATGGCATAACACGAGAAATGAAAAAAGCGATCAAAGAAATAAAGGAAATGAA
TCAGGAGGCTGGATTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFA/cflA | Streptococcus mitis SK321 |
59.815 |
100 |
0.6 |
| comFA/cflA | Streptococcus pneumoniae Rx1 |
59.584 |
100 |
0.597 |
| comFA/cflA | Streptococcus pneumoniae D39 |
59.584 |
100 |
0.597 |
| comFA/cflA | Streptococcus pneumoniae R6 |
59.584 |
100 |
0.597 |
| comFA/cflA | Streptococcus mitis NCTC 12261 |
59.584 |
100 |
0.597 |
| comFA/cflA | Streptococcus pneumoniae TIGR4 |
59.353 |
100 |
0.595 |
| comFA | Lactococcus lactis subsp. cremoris KW2 |
50.251 |
92.13 |
0.463 |
| comFA | Latilactobacillus sakei subsp. sakei 23K |
36.952 |
100 |
0.37 |