Detailed information NTG0041356

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RTA_RS17655
• Genome accession: NC_015677
• Coordinates: 3673078..3674550 (+)
• Length: 490 a.a.
• NCBI ID: WP_041675722.1
• Uniprot ID: -
• Organism: Ramlibacter tataouinensis TTB310
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3668078..3679550

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RTA_RS17635 (Rta_34470)	ffh	3668864..3670228 (-)	1365	WP_013902791.1	signal recognition particle protein	-
RTA_RS17640 (Rta_34480)	-	3670300..3671115 (+)	816	WP_041675721.1	inner membrane protein YpjD	-
RTA_RS17645 (Rta_34490)	-	3671112..3671354 (+)	243	WP_013902793.1	PP0621 family protein	-
RTA_RS21380 (Rta_34500)	-	3671366..3673078 (+)	1713	WP_013902794.1	PAS domain-containing sensor histidine kinase	-
RTA_RS17655 (Rta_34510)	pilR	3673078..3674550 (+)	1473	WP_041675722.1	sigma-54 dependent transcriptional regulator	Regulator
RTA_RS17660 (Rta_34520)	ampD	3674525..3675118 (+)	594	WP_013902796.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
RTA_RS17665 (Rta_34530)	-	3675453..3678359 (+)	2907	WP_013902797.1	ribonucleoside-diphosphate reductase subunit alpha	-

Sequence

Protein

• Length: 490 a.a.
• Molecular weight: 52402.70 Da
• Isoelectric Point: 5.3874

>NTDB_id=41356 RTA_RS17655 WP_041675722.1 3673078..3674550(+) (pilR) [Ramlibacter tataouinensis TTB310]
MSQAVAATAQVLVVDDEPDLRTLYELTLLREGYRVDSAGTLAEAADLLQAKRFDAVITDMRLPDGLGLELLQRLVAEQRP
ERCVVMTAYGSAENAVEALKAGAFDYLTKPVDLKQFRSVVASAIRESEALPLRTQAAPRPAAGEAAPAGAQHALQRLVGG
SPAMQQVKDRIAKVARSMAPVLVRGESGTGKELVARAIHACSHRAEGPFVAVNCGAIPESLLEAEFFGARKGSYTGATAD
REGYFQAARGGTLFLDEIGDLPLAMQSKLLRAIQERQVRSLGSTQEDAVDVRIVSATHKDLAAEVQSGRFRQDLYYRLNV
IEILVPPLRERREDLPALCQALLARIAQETGMAVPVLSGVVLQQLASHPLQGNVRELENLLHRAVALSDGNELQVDATPT
PAAAAQEPAAATAAAAPAAAVVADEPMPSDLQAYLDQQEREILVKALHESGFNRTAAAQRLGLSLRQIRYRIARLAIAAP
GDDAPDHPAA

Nucleotide

• Length: 1473 bp

>NTDB_id=41356 RTA_RS17655 WP_041675722.1 3673078..3674550(+) (pilR) [Ramlibacter tataouinensis TTB310]
ATGTCACAAGCCGTTGCCGCCACCGCCCAGGTGCTCGTCGTGGACGACGAACCCGACCTGCGCACCCTGTACGAGCTGAC
CCTGCTGCGCGAGGGCTACCGCGTGGACTCCGCCGGCACGCTGGCCGAGGCGGCCGACCTGCTGCAGGCCAAGCGCTTCG
ATGCCGTGATCACCGACATGCGGCTGCCCGACGGCCTGGGACTGGAGCTGCTGCAGCGTCTGGTGGCCGAGCAGCGCCCC
GAGCGCTGCGTGGTCATGACGGCCTATGGTTCGGCCGAGAACGCGGTGGAGGCGCTCAAGGCCGGCGCCTTCGACTACCT
CACCAAGCCGGTGGACCTCAAGCAGTTCCGCAGCGTGGTGGCTTCCGCCATCCGCGAGAGCGAGGCGCTGCCCCTGCGGA
CGCAGGCCGCGCCCCGGCCGGCCGCGGGCGAGGCCGCGCCCGCCGGCGCCCAGCACGCGCTGCAGCGGCTGGTGGGCGGC
TCGCCAGCCATGCAGCAGGTCAAGGACCGCATCGCCAAGGTGGCCCGCAGCATGGCGCCGGTGCTGGTGCGCGGCGAATC
GGGAACCGGCAAGGAGCTGGTGGCGCGCGCCATCCACGCCTGCAGCCACCGCGCCGAGGGGCCGTTCGTGGCGGTGAACT
GCGGCGCCATCCCCGAGTCGCTGCTGGAAGCCGAGTTCTTCGGCGCGCGCAAGGGCTCCTACACCGGCGCCACGGCCGAC
CGCGAGGGCTATTTCCAGGCGGCGCGGGGGGGCACCCTGTTCCTGGACGAGATCGGCGATCTGCCGCTGGCCATGCAGTC
CAAGCTGCTGCGCGCCATCCAGGAGCGCCAGGTGCGCTCGCTGGGCTCCACCCAGGAGGACGCGGTCGACGTGCGCATCG
TCAGCGCCACGCACAAGGACCTGGCGGCCGAGGTCCAGTCGGGCCGCTTCCGGCAGGACCTGTACTACCGCCTCAACGTG
ATCGAGATTCTGGTGCCGCCGCTGCGCGAGCGCCGCGAGGACCTGCCGGCGCTGTGCCAGGCCCTGCTGGCCCGCATCGC
GCAGGAGACCGGCATGGCCGTGCCGGTGCTGTCCGGCGTGGTCCTGCAGCAGCTGGCTTCCCATCCCCTGCAGGGCAACG
TGCGCGAGCTGGAGAACCTGCTGCACCGTGCCGTGGCGCTGTCCGACGGCAACGAGCTGCAGGTCGACGCCACGCCGACC
CCGGCCGCGGCCGCGCAGGAACCCGCGGCAGCGACCGCGGCTGCTGCCCCCGCGGCAGCCGTCGTCGCGGACGAGCCCAT
GCCGTCGGACTTGCAGGCCTACCTGGACCAGCAGGAGCGAGAGATCCTGGTCAAGGCGCTGCACGAGAGCGGCTTCAACC
GCACGGCCGCGGCCCAGCGGCTGGGCCTGAGCCTGCGGCAGATCCGCTACCGCATCGCGCGGCTGGCGATCGCCGCGCCG
GGCGACGATGCACCCGACCACCCCGCCGCCTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (11-120)

• Sigma-54 interaction domain (Sigma54_activat) (157-323)

• Bacterial regulatory protein, Fis family (HTH_8) (435-474)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	52.665	95.714	0.504
pilR	Acinetobacter baumannii strain A118	41.649	96.531	0.402