Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GTK60_RS10030 Genome accession   NZ_CP047447
Coordinates   2112791..2114182 (-) Length   463 a.a.
NCBI ID   WP_011408074.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain K74     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2107791..2119182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTK60_RS10000 (GTK60_09975) - 2108039..2108668 (+) 630 WP_011408070.1 hypothetical protein -
  GTK60_RS10005 (GTK60_09980) - 2108638..2110164 (+) 1527 WP_042464666.1 membrane protein -
  GTK60_RS10010 (GTK60_09985) pilB 2110199..2111932 (+) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GTK60_RS10015 (GTK60_09990) - 2111941..2112288 (-) 348 WP_305954854.1 Fic family protein -
  GTK60_RS10020 - 2112289..2112450 (-) 162 WP_153296778.1 hypothetical protein -
  GTK60_RS10025 (GTK60_09995) - 2112512..2112718 (-) 207 WP_027703281.1 YhfG family protein -
  GTK60_RS10030 (GTK60_10000) pilR 2112791..2114182 (-) 1392 WP_011408074.1 sigma-54 dependent transcriptional regulator Regulator
  GTK60_RS10035 (GTK60_10005) - 2114513..2116126 (-) 1614 WP_011258366.1 PAS domain-containing sensor histidine kinase -
  GTK60_RS10040 (GTK60_10010) sucC 2116360..2117529 (+) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  GTK60_RS10045 (GTK60_10015) sucD 2117554..2118429 (+) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  GTK60_RS10050 (GTK60_10020) - 2118749..2119045 (+) 297 WP_011408075.1 hypothetical protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50077.41 Da        Isoelectric Point: 6.4493

>NTDB_id=413500 GTK60_RS10030 WP_011408074.1 2112791..2114182(-) (pilR) [Xanthomonas oryzae pv. oryzae strain K74]
MSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRLLGDSSAMESLRATIGKVARS
QAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLPQ
LAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAAV
EPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=413500 GTK60_RS10030 WP_011408074.1 2112791..2114182(-) (pilR) [Xanthomonas oryzae pv. oryzae strain K74]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCAC
CGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGT
CAGGCGCCGGTCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACG
CGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGA
AAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAA
GTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTC
CGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTTTTC
GACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAG
CTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGC
ACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACG
ACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTG
GAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGC
GATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGC
GTTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.268

99.784

0.482

Multiple sequence alignment