Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   H6X75_RS02565 Genome accession   NZ_CP060156
Coordinates   495521..496570 (+) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700608     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 490521..501570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6X75_RS02535 (H6X75_02510) - 491434..491790 (+) 357 WP_000114422.1 hypothetical protein -
  H6X75_RS02540 (H6X75_02515) dnaJ 492192..493328 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  H6X75_RS02545 (H6X75_02520) - 493662..493856 (-) 195 WP_001808905.1 hypothetical protein -
  H6X75_RS02550 (H6X75_02525) - 494018..494305 (-) 288 WP_000777753.1 hypothetical protein -
  H6X75_RS02555 (H6X75_02530) - 494315..494725 (-) 411 WP_001278301.1 HIT family protein -
  H6X75_RS02560 (H6X75_02535) pptA 494793..495524 (+) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  H6X75_RS02565 (H6X75_02540) pptB 495521..496570 (+) 1050 WP_000653771.1 ABC transporter permease Regulator
  H6X75_RS02570 (H6X75_02545) - 496738..497067 (-) 330 WP_000132572.1 hypothetical protein -
  H6X75_RS02575 (H6X75_02550) - 497343..497681 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  H6X75_RS02580 (H6X75_02555) comE/blpR 497731..498423 (+) 693 WP_223716556.1 LytTR family DNA-binding domain-containing protein Regulator
  H6X75_RS02585 (H6X75_02560) - 498437..499777 (+) 1341 WP_001017642.1 sensor histidine kinase -
  H6X75_RS02590 (H6X75_02565) blpC 499848..499976 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  H6X75_RS02595 (H6X75_02570) - 500033..501394 (-) 1362 WP_001069060.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=413489 H6X75_RS02565 WP_000653771.1 495521..496570(+) (pptB) [Streptococcus pneumoniae strain PZ900700608]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=413489 H6X75_RS02565 WP_000653771.1 495521..496570(+) (pptB) [Streptococcus pneumoniae strain PZ900700608]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47