Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RTA_RS01400 Genome accession   NC_015677
Coordinates   284328..285893 (+) Length   521 a.a.
NCBI ID   WP_013899581.1    Uniprot ID   F5Y4N0
Organism   Ramlibacter tataouinensis TTB310     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 279328..290893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTA_RS01375 (Rta_02780) argS 279786..281459 (+) 1674 WP_013899576.1 arginine--tRNA ligase -
  RTA_RS01380 (Rta_02790) - 281462..282088 (+) 627 WP_013899577.1 SPOR domain-containing protein -
  RTA_RS01385 (Rta_02800) - 282156..282800 (+) 645 WP_013899578.1 thiol:disulfide interchange protein DsbA/DsbL -
  RTA_RS01390 (Rta_02810) lptA 282902..283540 (+) 639 WP_013899579.1 lipopolysaccharide transport periplasmic protein LptA -
  RTA_RS01395 (Rta_02820) lptB 283537..284328 (+) 792 WP_013899580.1 LPS export ABC transporter ATP-binding protein -
  RTA_RS01400 (Rta_02830) rpoN/rpoN1 284328..285893 (+) 1566 WP_013899581.1 RNA polymerase factor sigma-54 Machinery gene
  RTA_RS01405 (Rta_02840) - 285896..287152 (+) 1257 WP_013899582.1 class I SAM-dependent RNA methyltransferase -
  RTA_RS01410 (Rta_02850) - 287133..287555 (+) 423 WP_013899583.1 putative toxin-antitoxin system toxin component, PIN family -
  RTA_RS01415 (Rta_02860) - 287552..288328 (+) 777 WP_013899584.1 YecA family protein -
  RTA_RS01420 (Rta_02870) - 288345..289265 (-) 921 WP_013899585.1 DUF2279 domain-containing protein -
  RTA_RS01425 (Rta_02880) - 289244..290143 (-) 900 WP_041674947.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 57074.40 Da        Isoelectric Point: 5.0792

>NTDB_id=41340 RTA_RS01400 WP_013899581.1 284328..285893(+) (rpoN/rpoN1) [Ramlibacter tataouinensis TTB310]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLGDNPFLELSIDEAPREEFGVAQADAPVPEADREFEHAQE
FTAAGPEGERSAGTGDVDAAPAPDSGPSDWEGDGSTELVPDDGEWGGEAPARRNNAAGDDGEVDATELARSQESLPAHLH
RQALALRLCEEDRAALRFLIESLNDDGYLEDSLESLAAGLAGDDPQQQEELVHRFTVALGLLHHLDPAGVGARSLAECLT
LQLKAVANGSADSPCHTALAICRQPIELLARRDVKRLAQLTGEGEERIKAAIALIARLEPKPGRRFVDVERNIVVPDVLV
TKVGRGGQFRFRVQLNPDVMPRLRVHDVYAGALKAHKGEGHQALQQRLQEARWFIKNIQQRFDTILRVSNAIVERQKNFF
VHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTFELKYFFGSALGTETGGNASSTAVRALIKQFVASEDAKK
PLSDSQISDMLKEQGIECARRTVAKYREALRIAPANLRKAL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=41340 RTA_RS01400 WP_013899581.1 284328..285893(+) (rpoN/rpoN1) [Ramlibacter tataouinensis TTB310]
ATGAAGCAGGGCCTGTCGCTGCGCGTTTCGCAGCACCTGGCGCTCACGCCGCAGCTGCAGCAGTCCATCCGGCTGCTGCA
GCTGTCCACGCTGGAGCTGTCGCAGGAAGTCGAGCAGATGCTGGGCGACAACCCGTTCCTGGAGCTCAGCATCGACGAGG
CGCCGCGCGAGGAGTTCGGGGTGGCCCAGGCCGATGCGCCGGTGCCGGAAGCCGACCGCGAATTCGAGCATGCGCAGGAG
TTCACGGCGGCCGGCCCCGAGGGCGAGCGCTCCGCGGGCACGGGCGACGTGGACGCCGCGCCGGCCCCGGACAGCGGCCC
TTCGGACTGGGAGGGCGACGGCAGCACGGAGCTGGTGCCCGACGACGGCGAATGGGGCGGCGAGGCGCCCGCACGGCGCA
ACAACGCGGCCGGCGACGACGGCGAGGTCGATGCCACCGAGCTGGCGCGCAGCCAGGAGTCGCTGCCGGCCCACCTGCAC
CGGCAGGCGCTGGCCCTGCGGCTGTGCGAGGAGGACCGCGCCGCGCTGCGCTTCCTGATCGAATCGCTCAACGACGACGG
CTACCTGGAGGACTCGCTCGAGTCGCTGGCCGCCGGCCTGGCCGGGGACGATCCGCAGCAGCAGGAGGAGTTGGTGCACC
GCTTCACCGTCGCCCTGGGCCTGCTGCACCACCTGGACCCGGCGGGCGTGGGCGCCCGGTCGCTGGCCGAGTGCCTGACG
CTGCAGCTGAAGGCCGTGGCCAACGGCAGCGCCGATTCGCCCTGCCACACGGCGCTGGCCATCTGCCGCCAGCCGATCGA
GCTGCTGGCGCGGCGCGACGTCAAGCGCCTGGCGCAGCTCACCGGCGAGGGCGAGGAGCGCATCAAGGCCGCCATCGCGC
TGATCGCGCGGCTGGAGCCCAAGCCCGGCCGCCGCTTCGTCGACGTGGAGCGCAACATCGTGGTGCCGGACGTGCTGGTC
ACCAAGGTCGGCCGCGGCGGGCAGTTCAGGTTCCGCGTTCAGCTCAACCCCGACGTGATGCCGCGCCTGCGCGTGCACGA
CGTGTATGCCGGCGCGCTCAAGGCGCACAAGGGCGAGGGCCACCAGGCACTGCAGCAGCGGCTGCAGGAGGCGCGCTGGT
TCATCAAGAACATCCAGCAACGCTTCGACACCATCCTGCGCGTGTCCAACGCCATCGTCGAGCGCCAGAAGAACTTCTTC
GTGCACGGCGAACTGGCCATGCGCCCGCTGGTGCTGCGCGAGATCGCCGACGAGCTGGGGCTGCACGAGTCGACCATCTC
GCGCGTGACCACGGCCAAGTACATGGCCACGCCCTTCGGCACCTTCGAGCTCAAGTACTTCTTCGGCTCGGCCCTGGGCA
CCGAGACCGGCGGCAACGCGTCCAGCACCGCGGTGCGCGCGCTGATCAAGCAGTTCGTCGCCAGCGAGGACGCGAAGAAG
CCGCTGTCGGACAGCCAGATCTCCGACATGCTCAAGGAGCAGGGCATCGAGTGCGCGCGCCGCACCGTGGCCAAGTACCG
CGAGGCGCTGCGCATCGCGCCGGCGAACCTGCGCAAGGCCCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(146-349)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(363-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5Y4N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.919

100

0.539

Multiple sequence alignment