Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   H5404_RS07100 Genome accession   NZ_CP060087
Coordinates   1590504..1591160 (-) Length   218 a.a.
NCBI ID   WP_053316183.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJA114     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585504..1596160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS07085 (H5404_07085) - 1586612..1587952 (-) 1341 WP_005462986.1 HlyD family type I secretion periplasmic adaptor subunit -
  H5404_RS07090 (H5404_07090) - 1587927..1589645 (-) 1719 WP_025540102.1 type I secretion system permease/ATPase -
  H5404_RS07095 (H5404_07095) - 1589707..1590297 (-) 591 WP_015313551.1 calcium-binding protein -
  H5404_RS07100 (H5404_07100) qstR 1590504..1591160 (-) 657 WP_053316183.1 cyclic-di-GMP-binding transcriptional regulator CpsQ Regulator
  H5404_RS07105 (H5404_07105) - 1591386..1592057 (-) 672 WP_140218414.1 LuxR C-terminal-related transcriptional regulator -
  H5404_RS07110 (H5404_07110) - 1592325..1592525 (-) 201 WP_005462979.1 chromosome segregation ATPase -
  H5404_RS07115 (H5404_07115) - 1592582..1594498 (-) 1917 WP_023623719.1 methyl-accepting chemotaxis protein -
  H5404_RS07120 (H5404_07120) - 1594814..1595770 (+) 957 WP_185215300.1 AAA family ATPase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25149.86 Da        Isoelectric Point: 5.7424

>NTDB_id=413385 H5404_RS07100 WP_053316183.1 1590504..1591160(-) (qstR) [Vibrio parahaemolyticus strain TJA114]
MRNIMEQYTEKPEILMLTQQSLQSENFKEMLSKNTETKITIIDAKNPSYHELIPDRYFLLVDFSVDTPSDTLVYLKDSDK
VLGTIMLNLGYDLDTEELASWPHVKGIFGPLDSMEKVCRGLGAIVKGDNWLSRRLLDQLVNYYKGKESNNVSEPAIEVEL
TRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRNL

Nucleotide


Download         Length: 657 bp        

>NTDB_id=413385 H5404_RS07100 WP_053316183.1 1590504..1591160(-) (qstR) [Vibrio parahaemolyticus strain TJA114]
ATGAGAAACATTATGGAACAGTACACGGAAAAGCCTGAAATCCTAATGCTCACTCAACAAAGTTTACAGAGTGAAAACTT
TAAGGAAATGCTTTCTAAAAATACAGAAACGAAGATAACAATCATTGATGCTAAAAACCCTAGCTATCATGAACTCATTC
CAGATCGTTACTTTTTATTGGTTGACTTTTCAGTTGATACACCTTCTGACACTTTAGTTTATCTAAAGGATAGCGATAAA
GTGCTAGGTACTATCATGCTTAATCTGGGTTATGACTTAGATACCGAAGAGCTAGCATCTTGGCCTCATGTCAAAGGCAT
ATTTGGTCCATTGGACTCTATGGAAAAGGTTTGTCGAGGATTAGGGGCCATTGTTAAAGGAGATAATTGGCTATCAAGAA
GACTGTTGGATCAATTGGTAAATTATTACAAAGGAAAAGAATCGAATAACGTTTCAGAGCCTGCAATTGAAGTAGAACTG
ACACGACGCGAAATTCAGGTTCTTAAAATGTTGAAGGAGGGGGGGTCAAATATGGAAATAGCTGACTCACTATTTATCAG
CGAACATACTATTAAATCGCATCTATACAATATTTTTAGAAAGTTAGAAGTGAAAAATAGGACGCAAGCCACAAGTTGGG
CAAAAAGAAACCTCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

40.909

90.826

0.372

Multiple sequence alignment