Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GTO85_RS00040 | Genome accession | NZ_CP047415 |
| Coordinates | 9265..9783 (+) | Length | 172 a.a. |
| NCBI ID | WP_005721894.1 | Uniprot ID | - |
| Organism | Lactobacillus crispatus strain 1D | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4265..14783
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTO85_RS00030 (GTO85_00030) | gyrA | 6222..8702 (+) | 2481 | WP_180861275.1 | DNA gyrase subunit A | - |
| GTO85_RS00035 (GTO85_00035) | rpsF | 8919..9215 (+) | 297 | WP_005723612.1 | 30S ribosomal protein S6 | - |
| GTO85_RS00040 (GTO85_00040) | ssb | 9265..9783 (+) | 519 | WP_005721894.1 | single-stranded DNA-binding protein | Machinery gene |
| GTO85_RS00045 (GTO85_00045) | rpsR | 9811..10047 (+) | 237 | WP_003549366.1 | 30S ribosomal protein S18 | - |
| GTO85_RS00050 (GTO85_00050) | - | 10106..10576 (-) | 471 | WP_013085590.1 | hypothetical protein | - |
| GTO85_RS00055 (GTO85_00055) | - | 10560..10913 (-) | 354 | WP_035442818.1 | helix-turn-helix domain-containing protein | - |
| GTO85_RS00060 (GTO85_00060) | - | 11246..11563 (+) | 318 | WP_023487822.1 | hypothetical protein | - |
| GTO85_RS00065 (GTO85_00065) | - | 11602..12600 (+) | 999 | WP_023487823.1 | helveticin J family class III bacteriocin | - |
| GTO85_RS00070 (GTO85_00070) | - | 12741..13856 (+) | 1116 | WP_173636655.1 | SLAP domain-containing protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18679.21 Da Isoelectric Point: 4.7317
>NTDB_id=413385 GTO85_RS00040 WP_005721894.1 9265..9783(+) (ssb) [Lactobacillus crispatus strain 1D]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNASSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNASSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=413385 GTO85_RS00040 WP_005721894.1 9265..9783(+) (ssb) [Lactobacillus crispatus strain 1D]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTAGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTAGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.143 |
100 |
0.622 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.705 |
100 |
0.529 |