Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GTO84_RS00040 Genome accession   NZ_CP047412
Coordinates   9543..10094 (+) Length   183 a.a.
NCBI ID   WP_180858222.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain 2D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4543..15094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTO84_RS00030 (GTO84_00030) gyrA 6443..8995 (+) 2553 WP_003701422.1 DNA gyrase subunit A -
  GTO84_RS00035 (GTO84_00035) rpsF 9206..9502 (+) 297 WP_269148441.1 30S ribosomal protein S6 -
  GTO84_RS00040 (GTO84_00040) ssb 9543..10094 (+) 552 WP_180858222.1 single-stranded DNA-binding protein Machinery gene
  GTO84_RS00045 (GTO84_00045) rpsR 10116..10352 (+) 237 WP_003701427.1 30S ribosomal protein S18 -
  GTO84_RS00050 (GTO84_00050) - 10415..11278 (-) 864 WP_081530109.1 NAD(P)-dependent oxidoreductase -
  GTO84_RS00055 (GTO84_00055) - 11424..12437 (+) 1014 WP_180858224.1 glycosyltransferase family 2 protein -
  GTO84_RS00060 (GTO84_00060) - 12666..13448 (+) 783 WP_049154235.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20251.84 Da        Isoelectric Point: 4.4463

>NTDB_id=413359 GTO84_RS00040 WP_180858222.1 9543..10094(+) (ssb) [Ligilactobacillus salivarius strain 2D]
MINRAILVGRLTRDPDLRYTASGAAVATFTVAVNRQFTNQQGEREADFINCVMWRKPAENFANFTHKGSLVGIDGRIQTR
SYENQQGTRVYVTEVVAENFSLLESRAEADRYREQHGMTQNNYGNNAPSQNQASQFDSNPFGDSQSNNNFGGNTPANNGA
DNSADPFVDNGQSIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=413359 GTO84_RS00040 WP_180858222.1 9543..10094(+) (ssb) [Ligilactobacillus salivarius strain 2D]
GTGATTAATAGAGCTATTCTAGTAGGTCGTTTAACAAGAGATCCTGATTTACGTTACACGGCTTCTGGAGCTGCGGTTGC
TACATTTACTGTTGCTGTAAATCGTCAATTTACTAACCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTAATGT
GGCGTAAACCAGCAGAAAATTTTGCCAACTTTACTCATAAGGGTTCATTGGTTGGGATTGACGGACGAATTCAAACTCGT
TCTTATGAAAACCAGCAAGGAACAAGAGTATATGTTACAGAAGTTGTAGCCGAGAATTTCTCATTGTTGGAATCACGTGC
CGAAGCAGATCGTTATCGTGAACAACATGGAATGACACAAAATAATTACGGAAATAATGCTCCTTCACAAAATCAAGCAT
CACAGTTTGATAGTAATCCATTCGGTGATTCTCAATCAAATAATAATTTTGGTGGAAATACACCAGCAAATAATGGAGCA
GATAATAGTGCTGATCCATTTGTGGATAATGGACAATCTATTGATATTTCTGATGATGACTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.027

100

0.65
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.284

100

0.563

Multiple sequence alignment