Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GTO82_RS00045 | Genome accession | NZ_CP047409 |
| Coordinates | 11022..11540 (+) | Length | 172 a.a. |
| NCBI ID | WP_180873341.1 | Uniprot ID | A0A9X7Y569 |
| Organism | Lactobacillus johnsonii strain 3DG | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 6022..16540
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTO82_RS00030 (GTO82_00030) | gyrB | 6038..8005 (+) | 1968 | WP_180873339.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| GTO82_RS00035 (GTO82_00035) | gyrA | 8016..10505 (+) | 2490 | WP_180873340.1 | DNA gyrase subunit A | - |
| GTO82_RS00040 (GTO82_00040) | rpsF | 10692..10988 (+) | 297 | WP_004896331.1 | 30S ribosomal protein S6 | - |
| GTO82_RS00045 (GTO82_00045) | ssb | 11022..11540 (+) | 519 | WP_180873341.1 | single-stranded DNA-binding protein | Machinery gene |
| GTO82_RS00050 (GTO82_00050) | rpsR | 11565..11801 (+) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| GTO82_RS00055 (GTO82_00055) | - | 11895..12812 (+) | 918 | WP_180873342.1 | magnesium transporter CorA family protein | - |
| GTO82_RS00060 (GTO82_00060) | - | 12920..14938 (+) | 2019 | WP_180873343.1 | DHH family phosphoesterase | - |
| GTO82_RS00065 (GTO82_00065) | rplI | 14950..15405 (+) | 456 | WP_003651632.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18584.32 Da Isoelectric Point: 4.7531
>NTDB_id=413324 GTO82_RS00045 WP_180873341.1 11022..11540(+) (ssb) [Lactobacillus johnsonii strain 3DG]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIIDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIIDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=413324 GTO82_RS00045 WP_180873341.1 11022..11540(+) (ssb) [Lactobacillus johnsonii strain 3DG]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTATTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAAAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCTCCAAGCATGAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTATTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAAAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCTCCAAGCATGAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.494 |
100 |
0.622 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.568 |
100 |
0.517 |