Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GJV44_RS03875 | Genome accession | NZ_CP047396 |
| Coordinates | 1056821..1057930 (+) | Length | 369 a.a. |
| NCBI ID | WP_226806919.1 | Uniprot ID | - |
| Organism | Candidatus Vallotia cooleyia isolate 19-005_Vallotia | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1051821..1062930
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJV44_RS03840 (GJV44_00817) | - | 1051913..1052866 (+) | 954 | WP_226806410.1 | ribose-phosphate pyrophosphokinase | - |
| GJV44_RS03845 (GJV44_00818) | - | 1053067..1053684 (+) | 618 | WP_226806411.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| GJV44_RS03850 (GJV44_00819) | pth | 1053840..1054436 (+) | 597 | WP_226806412.1 | aminoacyl-tRNA hydrolase | - |
| GJV44_RS03855 (GJV44_00820) | - | 1054504..1054779 (-) | 276 | WP_226806413.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| GJV44_RS03860 (GJV44_00821) | coaD | 1054974..1055471 (-) | 498 | WP_226806414.1 | pantetheine-phosphate adenylyltransferase | - |
| GJV44_RS03865 (GJV44_00822) | rsmD | 1055594..1056280 (-) | 687 | WP_226806415.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| GJV44_RS03870 | - | 1056463..1056939 (-) | 477 | WP_226806929.1 | hypothetical protein | - |
| GJV44_RS03875 (GJV44_00823) | pilA | 1056821..1057930 (+) | 1110 | WP_226806919.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| GJV44_RS03880 (GJV44_00824) | rpoH | 1058581..1059501 (+) | 921 | WP_420885757.1 | RNA polymerase sigma factor RpoH | - |
| GJV44_RS03885 (GJV44_00825) | cydP | 1059707..1059985 (+) | 279 | WP_226806416.1 | cytochrome oxidase putative small subunit CydP | - |
| GJV44_RS03890 (GJV44_00826) | - | 1059975..1061558 (+) | 1584 | WP_226806417.1 | cytochrome ubiquinol oxidase subunit I | - |
| GJV44_RS03895 (GJV44_00827) | cydB | 1061574..1062713 (+) | 1140 | WP_226806418.1 | cytochrome d ubiquinol oxidase subunit II | - |
| GJV44_RS03900 (GJV44_00828) | cydX | 1062754..1062879 (+) | 126 | WP_226806419.1 | cytochrome bd-I oxidase subunit CydX | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 39330.32 Da Isoelectric Point: 6.3928
>NTDB_id=413293 GJV44_RS03875 WP_226806919.1 1056821..1057930(+) (pilA) [Candidatus Vallotia cooleyia isolate 19-005_Vallotia]
MTPTAVSIDWPNSASPAAPAPLEEVVARCRSSAVSQPVPIYPDGIATQQSVSAIDQEIVEIIPPPTPDPTAKHSWLSRLK
SGLTKTSSNLTSIFISMKVNEMLFENLETSLLMADAGVGVTTYLLDTLRQKVYSERLTDVQQIKATLRTLLIELLTPLER
SIVLGRAQPLVIIIAGVNGAGKTTSIGKLTKHLQSFNQSVMLAAGDTFRAAARQQLKIWGERNNVSVIQQETGDAAAVIF
DAVHAARARGIGVLIADTAGRLPTQTHLMEELRKVKRVTGKAMDGAPHEILLVLDANTGQNALAQVKAFDEALGLTGLIV
TKLDGSAKGGILAAIAHQHPVPVYFIGVGETVEDLQPFVASEFTDALLG
MTPTAVSIDWPNSASPAAPAPLEEVVARCRSSAVSQPVPIYPDGIATQQSVSAIDQEIVEIIPPPTPDPTAKHSWLSRLK
SGLTKTSSNLTSIFISMKVNEMLFENLETSLLMADAGVGVTTYLLDTLRQKVYSERLTDVQQIKATLRTLLIELLTPLER
SIVLGRAQPLVIIIAGVNGAGKTTSIGKLTKHLQSFNQSVMLAAGDTFRAAARQQLKIWGERNNVSVIQQETGDAAAVIF
DAVHAARARGIGVLIADTAGRLPTQTHLMEELRKVKRVTGKAMDGAPHEILLVLDANTGQNALAQVKAFDEALGLTGLIV
TKLDGSAKGGILAAIAHQHPVPVYFIGVGETVEDLQPFVASEFTDALLG
Nucleotide
Download Length: 1110 bp
>NTDB_id=413293 GJV44_RS03875 WP_226806919.1 1056821..1057930(+) (pilA) [Candidatus Vallotia cooleyia isolate 19-005_Vallotia]
ATCACACCTACTGCAGTATCCATTGACTGGCCCAATAGTGCATCACCTGCAGCCCCGGCACCTCTTGAAGAGGTTGTAGC
CAGATGCAGGTCTAGCGCAGTATCCCAACCTGTGCCCATCTATCCTGATGGAATCGCTACACAGCAGTCTGTCAGCGCTA
TAGATCAAGAGATCGTTGAGATCATACCGCCTCCTACTCCTGATCCAACCGCTAAGCATTCCTGGCTCAGTCGATTAAAG
TCGGGGTTGACCAAAACAAGTTCGAACCTAACTAGCATTTTCATTAGCATGAAGGTAAATGAAATGCTATTTGAGAATCT
CGAGACCTCGTTGTTAATGGCTGATGCTGGTGTAGGCGTTACCACTTACCTGCTTGACACACTTCGCCAGAAGGTTTACA
GCGAGCGACTGACTGACGTGCAACAGATTAAAGCGACATTGCGAACGTTATTGATCGAATTACTCACGCCGCTTGAGCGA
TCGATAGTGCTTGGTCGCGCACAACCCCTGGTGATCATTATTGCCGGAGTCAACGGTGCCGGAAAAACTACAAGCATTGG
TAAGCTTACTAAGCACTTACAGTCATTTAATCAGTCAGTAATGCTAGCTGCTGGTGATACATTCCGTGCTGCTGCGCGCC
AGCAGTTAAAAATTTGGGGCGAACGAAATAACGTCTCTGTCATCCAACAAGAGACTGGTGATGCAGCCGCAGTGATCTTC
GATGCGGTTCATGCCGCACGCGCGCGCGGCATCGGTGTGCTAATAGCAGATACTGCTGGACGCTTACCAACCCAGACGCA
TTTGATGGAAGAACTGCGCAAAGTTAAGCGAGTGACAGGCAAAGCGATGGATGGAGCGCCGCACGAAATACTATTAGTGC
TCGATGCAAATACAGGCCAGAACGCGTTAGCCCAGGTCAAGGCGTTCGATGAAGCGCTAGGGTTGACCGGACTCATTGTC
ACAAAGTTAGACGGTAGCGCGAAGGGTGGGATCTTAGCTGCAATTGCGCACCAACACCCGGTTCCAGTATACTTTATCGG
TGTCGGTGAGACAGTCGAAGACCTGCAGCCGTTCGTTGCTTCCGAATTTACTGACGCGCTACTTGGGTAG
ATCACACCTACTGCAGTATCCATTGACTGGCCCAATAGTGCATCACCTGCAGCCCCGGCACCTCTTGAAGAGGTTGTAGC
CAGATGCAGGTCTAGCGCAGTATCCCAACCTGTGCCCATCTATCCTGATGGAATCGCTACACAGCAGTCTGTCAGCGCTA
TAGATCAAGAGATCGTTGAGATCATACCGCCTCCTACTCCTGATCCAACCGCTAAGCATTCCTGGCTCAGTCGATTAAAG
TCGGGGTTGACCAAAACAAGTTCGAACCTAACTAGCATTTTCATTAGCATGAAGGTAAATGAAATGCTATTTGAGAATCT
CGAGACCTCGTTGTTAATGGCTGATGCTGGTGTAGGCGTTACCACTTACCTGCTTGACACACTTCGCCAGAAGGTTTACA
GCGAGCGACTGACTGACGTGCAACAGATTAAAGCGACATTGCGAACGTTATTGATCGAATTACTCACGCCGCTTGAGCGA
TCGATAGTGCTTGGTCGCGCACAACCCCTGGTGATCATTATTGCCGGAGTCAACGGTGCCGGAAAAACTACAAGCATTGG
TAAGCTTACTAAGCACTTACAGTCATTTAATCAGTCAGTAATGCTAGCTGCTGGTGATACATTCCGTGCTGCTGCGCGCC
AGCAGTTAAAAATTTGGGGCGAACGAAATAACGTCTCTGTCATCCAACAAGAGACTGGTGATGCAGCCGCAGTGATCTTC
GATGCGGTTCATGCCGCACGCGCGCGCGGCATCGGTGTGCTAATAGCAGATACTGCTGGACGCTTACCAACCCAGACGCA
TTTGATGGAAGAACTGCGCAAAGTTAAGCGAGTGACAGGCAAAGCGATGGATGGAGCGCCGCACGAAATACTATTAGTGC
TCGATGCAAATACAGGCCAGAACGCGTTAGCCCAGGTCAAGGCGTTCGATGAAGCGCTAGGGTTGACCGGACTCATTGTC
ACAAAGTTAGACGGTAGCGCGAAGGGTGGGATCTTAGCTGCAATTGCGCACCAACACCCGGTTCCAGTATACTTTATCGG
TGTCGGTGAGACAGTCGAAGACCTGCAGCCGTTCGTTGCTTCCGAATTTACTGACGCGCTACTTGGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
59.272 |
81.843 |
0.485 |