Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   FHE72_RS14860 Genome accession   NZ_CP047394
Coordinates   2884437..2885555 (-) Length   372 a.a.
NCBI ID   WP_159362236.1    Uniprot ID   -
Organism   Rossellomorea vietnamensis strain 151-6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2879437..2890555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHE72_RS14820 (FHE72_14820) - 2879948..2880739 (+) 792 WP_061809662.1 YqhG family protein -
  FHE72_RS14825 (FHE72_14825) - 2880820..2880999 (-) 180 WP_034757956.1 YqzE family protein -
  FHE72_RS14830 (FHE72_14830) - 2881056..2881556 (-) 501 WP_159362231.1 shikimate kinase -
  FHE72_RS14835 (FHE72_14835) comGF 2881909..2882439 (-) 531 WP_159362232.1 competence type IV pilus minor pilin ComGF -
  FHE72_RS14840 (FHE72_14840) - 2882339..2882665 (-) 327 WP_159362233.1 type II secretion system protein -
  FHE72_RS14845 (FHE72_14845) comGD 2882649..2883101 (-) 453 WP_350448852.1 competence type IV pilus minor pilin ComGD -
  FHE72_RS14850 (FHE72_14850) comGC 2883091..2883420 (-) 330 WP_252189366.1 competence type IV pilus major pilin ComGC -
  FHE72_RS14855 (FHE72_14855) comGB 2883431..2884486 (-) 1056 WP_159362235.1 competence type IV pilus assembly protein ComGB -
  FHE72_RS14860 (FHE72_14860) comGA 2884437..2885555 (-) 1119 WP_159362236.1 competence type IV pilus ATPase ComGA Machinery gene
  FHE72_RS14865 (FHE72_14865) - 2885679..2886317 (+) 639 WP_079531728.1 cupin domain-containing protein -
  FHE72_RS14875 (FHE72_14875) - 2886684..2887064 (-) 381 WP_034757676.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  FHE72_RS14880 (FHE72_14880) - 2887342..2887587 (+) 246 WP_034757675.1 DUF2626 domain-containing protein -
  FHE72_RS14885 (FHE72_14885) - 2887628..2888263 (-) 636 WP_034757673.1 MBL fold metallo-hydrolase -
  FHE72_RS14890 (FHE72_14890) - 2888460..2888633 (+) 174 WP_034757672.1 DUF2759 domain-containing protein -
  FHE72_RS14895 (FHE72_14895) - 2888846..2889199 (+) 354 WP_034757670.1 helix-turn-helix domain-containing protein -
  FHE72_RS14900 (FHE72_14900) - 2889250..2889564 (-) 315 WP_159362237.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 41995.79 Da        Isoelectric Point: 8.9200

>NTDB_id=413259 FHE72_RS14860 WP_159362236.1 2884437..2885555(-) (comGA) [Rossellomorea vietnamensis strain 151-6]
MSYIYFKKTERWCQSIFHSVESLSEVMIGEAFSNDATDVHLIPRTKDYLIQFRKLGVLAPFQTIDPDQADRLIAHLKFMA
SMDIGEKRKPQSGSFSLTVRNTPLSLRISTLPTTHLKESLVIRILPQKYQIPIEKMSLYPSSAKKLLALLMHSHGLILFT
GPTGSGKTTTLYSLVHHCSVVLNRNVITLEDPVEKQHDEMVQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDRETAE
IAIRASLTGHLVISTLHTRDAKGAIYRLMELGIEWHDIEQTLLAVSAQRLLKLLCPICKAECGGQCLRGKNRNRASVYEI
ITGSSLKEVLKEAKGESAEHQYRTLQALICKGVALGFVSEHEYRKWVHEEKR

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=413259 FHE72_RS14860 WP_159362236.1 2884437..2885555(-) (comGA) [Rossellomorea vietnamensis strain 151-6]
ATGTCGTATATTTACTTTAAGAAAACAGAAAGGTGGTGCCAATCCATATTTCACTCAGTCGAATCATTATCGGAAGTGAT
GATCGGAGAAGCGTTCAGCAATGATGCCACAGATGTTCATTTGATTCCCAGAACGAAAGATTACTTGATTCAATTCAGAA
AGCTCGGGGTACTGGCTCCATTCCAGACCATAGACCCGGATCAGGCAGATCGCTTGATTGCCCATCTGAAGTTCATGGCC
TCCATGGATATCGGAGAAAAGCGTAAGCCCCAAAGCGGCTCCTTCAGCCTTACCGTAAGAAATACCCCCTTATCTCTCAG
GATTTCCACTCTGCCAACCACCCACTTGAAAGAAAGTCTCGTCATTCGGATACTCCCACAAAAATACCAGATTCCTATTG
AAAAAATGTCACTATACCCGTCATCAGCTAAAAAACTTCTTGCACTTCTTATGCATTCCCATGGACTCATCCTGTTTACA
GGACCGACCGGAAGTGGTAAAACGACGACTTTGTATTCCCTCGTCCACCATTGTTCCGTCGTCCTGAACCGGAATGTGAT
CACCCTTGAGGATCCAGTCGAGAAGCAGCATGATGAAATGGTGCAGATCCAGGTGAATGAAAAAGCAGGGATTACGTATT
CAACGGGATTAAAAGCCATTTTGCGTCATGATCCCGACATCATCATGGTGGGGGAAATCCGGGACCGGGAGACGGCAGAG
ATTGCGATACGGGCGTCCCTTACAGGTCATTTGGTTATTTCCACATTACATACAAGAGATGCAAAAGGGGCGATATATCG
CTTGATGGAACTGGGGATCGAGTGGCACGATATCGAACAGACGCTGCTTGCTGTATCTGCTCAGAGATTGCTGAAGCTCC
TCTGTCCGATCTGCAAAGCAGAATGTGGCGGTCAATGTCTTAGGGGGAAAAACCGTAACAGGGCATCTGTCTATGAAATC
ATTACGGGCAGCTCTTTGAAGGAAGTATTGAAGGAGGCTAAGGGCGAGAGTGCGGAACATCAGTATCGCACATTGCAGGC
TTTAATATGTAAGGGGGTGGCACTTGGTTTTGTTTCAGAACATGAATATAGGAAATGGGTTCACGAAGAAAAGCGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(27-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.085

95.43

0.516

Multiple sequence alignment