Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GSN03_RS20005 Genome accession   NZ_CP047366
Coordinates   3915429..3917168 (-) Length   579 a.a.
NCBI ID   WP_000947733.1    Uniprot ID   -
Organism   Bacillus nitratireducens strain BM02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3910429..3922168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS19985 (GSN03_19820) - 3910640..3911098 (-) 459 WP_212087978.1 SMI1/KNR4 family protein -
  GSN03_RS19990 (GSN03_19825) - 3911120..3912343 (-) 1224 WP_212087979.1 WXG100 family type VII secretion target -
  GSN03_RS19995 (GSN03_19830) spo0A 3912936..3913730 (-) 795 WP_000411416.1 sporulation transcription factor Spo0A Regulator
  GSN03_RS20000 (GSN03_19835) spoIVB 3914018..3915310 (-) 1293 WP_071747073.1 SpoIVB peptidase -
  GSN03_RS20005 (GSN03_19840) recN 3915429..3917168 (-) 1740 WP_000947733.1 DNA repair protein RecN Machinery gene
  GSN03_RS20010 (GSN03_19845) argR 3917435..3917884 (-) 450 WP_001032584.1 arginine repressor ArgR -
  GSN03_RS20015 (GSN03_19850) - 3918027..3918866 (-) 840 WP_000111880.1 TlyA family RNA methyltransferase -
  GSN03_RS20020 (GSN03_19855) dxs 3918870..3920762 (-) 1893 WP_212087980.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GSN03_RS20025 (GSN03_19860) ispA 3921071..3921964 (-) 894 WP_098271190.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65855.93 Da        Isoelectric Point: 4.9327

>NTDB_id=413046 GSN03_RS20005 WP_000947733.1 3915429..3917168(-) (recN) [Bacillus nitratireducens strain BM02]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGDRIVKQL
DIYQNVYGDYERLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DSQGLDHVRNAMSQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLKELEGVILKEATLLSDMRHELADHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=413046 GSN03_RS20005 WP_000947733.1 3915429..3917168(-) (recN) [Bacillus nitratireducens strain BM02]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCCGGAAAATCGATTATTATTGATGCGATTAGTTTGCTTGTTGGCGGCCGTGGTTCAGCGGAGT
TTGTTCGATATGGAACAGAAAAGGCTGAAATAGAGGGTTTATTTTATGTAGAAGATGATAAGCATCCATGTATCGCAAAG
GCAGAAGAATTAGATATAGAAATAGAAGATGGCATGATTATTTTGAAACGTGATATCGCTGCGAACGGAAAAAGTGTATG
CCGTGTAAATGGGAAGCTTGTTACACTTAGTATATTAAAAGAAATTGGAAAAACGCTTGTTGATATACATGGACAGCATG
AAACGCAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTAGATCATTTTGATGGAGATCGTATTGTTAAACAATTA
GACATATATCAGAACGTATACGGAGACTATGAAAGATTAAAAAAACAGCTGAAATCTTTAAGTGAAAATGAACAACAAAT
GGCTCATCGTCTAGATTTAATTCAATTCCAACATGAAGAAATTCGTAAGGCAGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAACGCTTGAAAATATCCAATTTTGAAAAGATTTATAAAGCGTTAGGGGATGCGTATCGTTCGTTGAGTGGG
GACAGCCAAGGGCTAGATCATGTAAGGAATGCAATGAGCCAAATGGAGAGTATTACGCATTTAGATGAGGCGTATCAAGA
AAACCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCATATCAGCTTAGAGAAAAGTTAGATATGATGG
AATATGATCCGAAACGTTTAGATGAAATTGAAACGCGGTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACAATTGAAAATAAAGACGTACATATTGAAAC
GACGAGAAAGCAGCTAAAGGAATTAGAAGGTGTTATCTTAAAAGAAGCAACGTTGTTAAGTGATATGCGTCATGAACTGG
CAGACCATCTTACAAACGCTATTCATCAAGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATAATG
AAGAGGGAAGGAAATGCAGAAGAACCTCTTGTAGAAGGAACACCGGTGAAACTTACGGCGGATGGCTACGATCACGTAGA
GTTTTATATTTCAACGAACCCTGGTGAACCGTTAAAACCGCTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTGGCTTTAAAAAGTATTTTTTCTAAGCATCAAGGTGTTGCTTCAGTTATTTTTGATGAAGTGGATACAGGTGTGAGT
GGTCGAGTTGCACAGGCTATTGCGGAAAAAATCTATCGTGTATCGGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAGGTAGCTTCAATGGCGGACTCGCATTTATTTATTAGAAAACAAGTGGCGAATGATCGGACGATTACATCTGTTACGG
TGCTAAGTACGGATGAAAAAGTAACAGAAATTGCTCGGATGATTTCTGGTGTAGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAGTTACTTACGCAAGCACATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598

Multiple sequence alignment