Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GSN03_RS19995 Genome accession   NZ_CP047366
Coordinates   3912936..3913730 (-) Length   264 a.a.
NCBI ID   WP_000411416.1    Uniprot ID   A0A1G4L491
Organism   Bacillus nitratireducens strain BM02     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3907936..3918730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS19960 (GSN03_19795) - 3908049..3908777 (-) 729 WP_000172552.1 glycerophosphodiester phosphodiesterase -
  GSN03_RS19965 (GSN03_19800) - 3908828..3908974 (+) 147 WP_001247671.1 YycC family protein -
  GSN03_RS19970 (GSN03_19805) - 3909123..3909695 (-) 573 WP_000727129.1 PRK06770 family protein -
  GSN03_RS28400 - 3909946..3910044 (-) 99 Protein_3934 sporulation initiation factor Spo0A C-terminal domain-containing protein -
  GSN03_RS19980 (GSN03_19815) - 3910283..3910553 (-) 271 Protein_3935 hypothetical protein -
  GSN03_RS19985 (GSN03_19820) - 3910640..3911098 (-) 459 WP_212087978.1 SMI1/KNR4 family protein -
  GSN03_RS19990 (GSN03_19825) - 3911120..3912343 (-) 1224 WP_212087979.1 WXG100 family type VII secretion target -
  GSN03_RS19995 (GSN03_19830) spo0A 3912936..3913730 (-) 795 WP_000411416.1 sporulation transcription factor Spo0A Regulator
  GSN03_RS20000 (GSN03_19835) spoIVB 3914018..3915310 (-) 1293 WP_071747073.1 SpoIVB peptidase -
  GSN03_RS20005 (GSN03_19840) recN 3915429..3917168 (-) 1740 WP_000947733.1 DNA repair protein RecN Machinery gene
  GSN03_RS20010 (GSN03_19845) argR 3917435..3917884 (-) 450 WP_001032584.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29427.13 Da        Isoelectric Point: 7.1176

>NTDB_id=413045 GSN03_RS19995 WP_000411416.1 3912936..3913730(-) (spo0A) [Bacillus nitratireducens strain BM02]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=413045 GSN03_RS19995 WP_000411416.1 3912936..3913730(-) (spo0A) [Bacillus nitratireducens strain BM02]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCAATGCTAGAGAGCTATGTTGCTGCTCAGGA
TGATATGGAAGTGATCGGAACTGCTTACAATGGTCAAGAATGTTTAAACTTATTGACAGACAAGCAGCCTGATGTACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGTGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTGAGTGGTAAGGCAAATGCTACCATTAAACGTCCAT
TACCATCTTTCCGATCAGCGACAACGATCGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATCGCAAAGAAATATAATACAACAGCAAGTCGTGTCGAACGCGCGATCC
GTCACGCAATTGAAGTGGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G4L491

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.524

100

0.814

Multiple sequence alignment