Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GSN03_RS06195 Genome accession   NZ_CP047366
Coordinates   1222150..1223976 (+) Length   608 a.a.
NCBI ID   WP_212089622.1    Uniprot ID   -
Organism   Bacillus nitratireducens strain BM02     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217150..1228976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS06175 (GSN03_06110) - 1217281..1217955 (-) 675 WP_000362599.1 TerC family protein -
  GSN03_RS06180 (GSN03_06115) mecA 1218473..1219156 (+) 684 WP_212089621.1 adaptor protein MecA Regulator
  GSN03_RS06185 (GSN03_06120) - 1219229..1220773 (+) 1545 WP_000799215.1 cardiolipin synthase -
  GSN03_RS06190 (GSN03_06125) - 1220864..1222099 (+) 1236 WP_212091504.1 competence protein CoiA -
  GSN03_RS06195 (GSN03_06130) pepF 1222150..1223976 (+) 1827 WP_212089622.1 oligoendopeptidase F Regulator
  GSN03_RS06200 - 1224123..1224296 (-) 174 WP_000748141.1 hypothetical protein -
  GSN03_RS06205 (GSN03_06135) - 1224526..1225419 (-) 894 WP_000360668.1 ClpXP adapter SpxH family protein -
  GSN03_RS06210 (GSN03_06140) - 1225419..1225817 (-) 399 WP_000043388.1 hypothetical protein -
  GSN03_RS06215 (GSN03_06145) - 1226002..1226580 (-) 579 WP_212089624.1 CYTH domain-containing protein -
  GSN03_RS06220 (GSN03_06150) - 1226726..1227097 (+) 372 WP_001180017.1 hypothetical protein -
  GSN03_RS06225 (GSN03_06155) - 1227128..1227766 (+) 639 WP_002201371.1 GTP pyrophosphokinase -
  GSN03_RS06230 (GSN03_06160) - 1227785..1228582 (+) 798 WP_000673196.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70316.65 Da        Isoelectric Point: 4.5985

>NTDB_id=413030 GSN03_RS06195 WP_212089622.1 1222150..1223976(+) (pepF) [Bacillus nitratireducens strain BM02]
MAEQNTVKSLPDRNEIEEANTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLAKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILAISEDTLQTFLQQNRELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQEMLLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=413030 GSN03_RS06195 WP_212089622.1 1222150..1223976(+) (pepF) [Bacillus nitratireducens strain BM02]
ATGGCTGAACAAAACACAGTAAAATCATTACCAGATCGCAATGAGATTGAAGAAGCAAACACATGGCGATTAGAAGATAT
TTTCCAAACTGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTGCCAAAGTTAACTGAATTTAAAGGTA
AGCTTGGTGACTCTGCAGACAATTTGCTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGCTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGATCGCGCAACAAATTTATA
CTCACAAGTATCTAGTAGCACAGCTTATATCGTGCCTGAAATTTTAGCTATTTCAGAAGATACATTGCAAACATTCTTAC
AACAAAATCGAGAACTAAGTGTATATGAGCATGCATTAGAAGAAATTACACGTCAACGCCCGCATGTATTATCGGAAGCT
GAAGAAGCGTTATTAGCAGAAGCATCTGAAGTGATGAGTGCATCAAGTAATACATTTGGTATGTTGAATAATGCAGATTT
AAAATTCCCATCTATTAAAGGTGAAGATGGAGAAGAAGTAGAAATAACACATGGTCGTTATATTCAATTTTTAGAAAGTG
ATGATCGTCGTGTGCGCGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGTGGGGCTGTGAAACGTAATAATTTCAATGCACGCGTTCGTAAATACGACTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTGAATCGGTAAATGATAATTTACACTTACTACATCGCTACATTG
ATATTCGTAAGCGTGCCCTAGGTCTTGATGAGCTTCATATGTATGATTTATATACACCGCTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCACAAGAAATGTTATTGAAATCTTTAAATGTACTTGGTGATGAATATGTTGAAATTTTAAA
AGAAGCATATGAGAATCGCTGGGTAGATGTATATGAGAATAAAGGAAAACGAAGTGGAGCATATTCATCTGGTGCATACG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCC
GTGCATAGTTACTATACAAGGAAGACACAACCGCACGTATATGGTGATTATTCAATCTTCGTTGCAGAAGTAGCATCAAC
TTGTAATGAAGCACTTCTAAATGATTACTTATTGAAGACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCACT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTCGAGCATATTATTCATAAGAAAGTACAA
GAAGGGCATGCTGTTACGCCGGACATGTTAACGGAAATCTACTATGATTTAAATAAGAAATATTTCGGTGACGCGTTAGT
GATCGATGAAGAAATCGGCTTAGAGTGGTCTCGTATTCCGCACTTCTATTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTCTATCAAAACAAATTTTAGAAGAAGGTCAACCAGCAGTAGAACGTTACATTAACGAATTC
TTAAAAGCAGGAAGTTCTGATTACCCAATTGAAGTGTTGAAAAAAGCAGGGGTAGATATGGCATCACCAGAACCTGTAAA
AGAAGCATTACAAGTGTTTGAAGAGAAATTAAATGAATTAGAAGCGCTATTGTTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.59

97.533

0.493

Multiple sequence alignment