Detailed information NTG0413025

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: GSN03_RS06075
• Genome accession: NZ_CP047366
• Coordinates: 1195127..1197727 (+)
• Length: 866 a.a.
• NCBI ID: WP_044741163.1
• Uniprot ID: -
• Organism: Bacillus nitratireducens strain BM02
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1190127..1202727

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSN03_RS06040 (GSN03_05975)	prsA	1190928..1191785 (-)	858	WP_212089608.1	peptidylprolyl isomerase PrsA	-
GSN03_RS06045 (GSN03_05980)	-	1191916..1192047 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
GSN03_RS06050 (GSN03_05985)	-	1192149..1193006 (+)	858	WP_000364458.1	YitT family protein	-
GSN03_RS06055 (GSN03_05990)	-	1193033..1193230 (-)	198	WP_000527405.1	DUF3813 domain-containing protein	-
GSN03_RS06060 (GSN03_05995)	-	1193231..1193371 (-)	141	WP_000516818.1	hypothetical protein	-
GSN03_RS06065 (GSN03_06000)	-	1193475..1194284 (-)	810	WP_001041222.1	Cof-type HAD-IIB family hydrolase	-
GSN03_RS06070 (GSN03_06005)	-	1194775..1194954 (+)	180	WP_000531422.1	YjzC family protein	-
GSN03_RS06075 (GSN03_06010)	clpC	1195127..1197727 (+)	2601	WP_044741163.1	ATP-dependent chaperone ClpB	Regulator
GSN03_RS06080 (GSN03_06015)	-	1197761..1197943 (-)	183	WP_001211112.1	YjzD family protein	-
GSN03_RS06085 (GSN03_06020)	-	1198100..1198834 (+)	735	WP_000028694.1	hydrolase	-
GSN03_RS06090 (GSN03_06025)	-	1198864..1199736 (+)	873	WP_212089610.1	NAD-dependent epimerase/dehydratase family protein	-
GSN03_RS06095 (GSN03_06030)	comZ	1199800..1199976 (+)	177	WP_001003333.1	ComZ family protein	Regulator
GSN03_RS06100 (GSN03_06035)	fabH	1200379..1201311 (+)	933	WP_044741165.1	beta-ketoacyl-ACP synthase III	-
GSN03_RS06105 (GSN03_06040)	fabF	1201343..1202581 (+)	1239	WP_212089612.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97467.58 Da
• Isoelectric Point: 5.1961

>NTDB_id=413025 GSN03_RS06075 WP_044741163.1 1195127..1197727(+) (clpC) [Bacillus nitratireducens strain BM02]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLTLLEQQDGLAVRIFQKMNVDIEALKQGVESLIKKKPSVTGSGAE
AGKLYVTGALQQLLVRAGKEAEKLQDDYISIEHVLLAFSEEKGDINQLFTRFHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDLGSQERLKVLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQTLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLEGLEEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=413025 GSN03_RS06075 WP_044741163.1 1195127..1197727(+) (clpC) [Bacillus nitratireducens strain BM02]
ATGGACTTAAATCAAATGACAACGAAAACACAGGAAGCGATTATGAGTGCTCAGTCTTTAGCGGTATCTCATCATCATCA
AGAAGTAGATACTGTTCATCTATTGCTTACGTTATTAGAGCAGCAAGACGGATTAGCAGTACGTATTTTTCAAAAAATGA
ATGTCGATATAGAAGCGTTAAAGCAAGGTGTAGAAAGTTTAATTAAGAAAAAGCCTTCTGTAACTGGAAGCGGGGCAGAG
GCGGGAAAATTATATGTAACAGGTGCTTTACAACAACTGCTTGTAAGAGCAGGGAAAGAAGCAGAGAAATTGCAGGATGA
CTACATTTCAATCGAACATGTATTGCTTGCTTTTTCTGAAGAAAAAGGCGATATAAATCAATTATTTACAAGATTTCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAGAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCTGAAGTGAGAGCAGGGAAAATTGATCCTGTTATTGGCCGAGA
TAGTGAAATTCGCCGCGTAATCCGCATTCTTTCACGTAAAACGAAAAATAACCCGGTTTTAATCGGAGAACCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGATTAGCACAGCGTATTGTGAAAAAAGATGTCCCAGAAGGATTAAAAGATAGAACAATC
TTCGCTTTAGATATGAGTGCACTTGTGGCCGGAGCAAAATTCCGCGGTGAGTTTGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGGCGTATTTTATTATTCATTGATGAACTTCATACAATCGTCGGCGCTGGTAAAACAGAAG
GAGCGATGGATGCAGGGAATATGTTAAAACCGATGCTAGCTCGTGGTGAACTACATTGTATCGGGGCGACAACGTTAGAT
GAATATCGTAAATATATCGAGAAAGATCCAGCGTTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCAATTTTACGTGGTTTAAAAGAGCGTTTTGAAATTTATCACGGTGTAAATATTCATGACCGTGCAATTG
TAGCAGCATCCGTTTTATCAGATCGATATATTTCTGATCGTTTTTTACCAGATAAAGCAATTGACCTTGTCGATGAAGCT
TGCGCAACAATTCGAACAGAAATTGATTCGATGCCAACAGAATTAGATGAAGTAACGCGTCGTATTATGCAATTAGAAAT
TGAAGAAGCTGCTCTTGGGAAAGAAAAGGACTTAGGTAGTCAAGAACGTCTAAAAGTACTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGATATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAACGCTTGCGCCGTGAGTTAGAAGAAGCAGAAGGAAATTACGATTTAAATAAAGCAGCTGAGCTTCGTCACGG
GAAAATTCCAGCTATCGAAAAAGAGTTAAAAGAAGCGGAAGAAATGGGTGCACATAATAAACAAGAGAATCGCTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCAGATATTGTTTCACGCTGGACTGGTATTCCTGTCGCAAAACTCGTTGAAGGC
GAACGTGAGAAATTATTGCGTCTAGAACAAATTTTATCAGAGCGTGTTATCGGTCAAGAAGAAGCGGTAAGCCTTGTATC
AGACGCAGTTCTTCGTGCGCGCGCTGGTATTAAAGATCCGAATCGTCCAATTGGTTCATTTATTTTCTTAGGACCTACAG
GTGTTGGTAAAACTGAGCTTGCAAAAACATTAGCACAAACGTTATTTGACAGTGAAGAGCAAATGATTCGTATCGATATG
TCTGAGTACATGGAGAAACACGCGGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTTGGATATGAAGAAGGCGGACA
ATTAACAGAAGCAGTAAGACGTAAACCATATTCTGTTATTTTGTTAGACGAAATCGAAAAAGCACATCCAGAAGTATTTA
ACATTTTATTACAAATGTTAGATGACGGACGCATTACAGATTCACAAGGTCGTACAGTAGACTTTAAAAATACGGTTATT
ATTATGACTTCGAATATTGGATCTGCTCACTTATTAGAAGGGCTAGAAGAAGATGGATCTATTAAAGAAGAGTCAAGAGA
ACTTGTAATGGGACAATTAAGAGGACATTTCCGACCAGAATTTTTAAATCGTGTCGATGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGTATTGTTGATAAGATTGTGAAAGAACTACAAGGCCGTTTAGCTGACCGTCACATTACA
GTAGAATTAACAGATGCAGCGAAAGAATTCGTTGTAGAAGCTGGATTTGATCCAATGTACGGAGCTCGTCCGTTAAAACG
ATATGTACAGCGTCAAGTTGAGACGAAATTAGCGAGAGAATTAATTGCAGGAACGATTACTGACAATAGTCATGTAGTAG
TTGATGTAGAAAATAACGAATTAGTCGTTCATGTGAAATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (345-446)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.657	100	0.482
clpC	Lactococcus lactis subsp. cremoris KW2	47.199	82.448	0.389