Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GTN30_RS07845 | Genome accession | NZ_CP047363 |
| Coordinates | 1477958..1478929 (-) | Length | 323 a.a. |
| NCBI ID | WP_138071469.1 | Uniprot ID | - |
| Organism | Macrococcoides canis strain Epi0076A | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1472958..1483929
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTN30_RS07810 (GTN30_07790) | gcvT | 1473653..1474738 (-) | 1086 | WP_138072996.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| GTN30_RS07815 (GTN30_07795) | - | 1474876..1475382 (-) | 507 | WP_138071461.1 | shikimate kinase | - |
| GTN30_RS07820 (GTN30_07800) | - | 1475543..1475995 (-) | 453 | WP_164953583.1 | competence type IV pilus minor pilin ComGF | - |
| GTN30_RS07825 (GTN30_07805) | - | 1475940..1476182 (-) | 243 | WP_164953584.1 | hypothetical protein | - |
| GTN30_RS07830 (GTN30_07810) | comGD | 1476169..1476594 (-) | 426 | WP_164953585.1 | competence type IV pilus minor pilin ComGD | - |
| GTN30_RS07835 (GTN30_07815) | comGC | 1476587..1476919 (-) | 333 | WP_174804829.1 | competence type IV pilus major pilin ComGC | - |
| GTN30_RS07840 (GTN30_07820) | comGB | 1476934..1477983 (-) | 1050 | WP_164953586.1 | competence type IV pilus assembly protein ComGB | - |
| GTN30_RS07845 (GTN30_07825) | comGA | 1477958..1478929 (-) | 972 | WP_138071469.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GTN30_RS07850 (GTN30_07830) | - | 1479142..1479390 (+) | 249 | WP_086042733.1 | DUF2626 domain-containing protein | - |
| GTN30_RS07855 (GTN30_07835) | - | 1479417..1480037 (-) | 621 | WP_138071471.1 | MBL fold metallo-hydrolase | - |
| GTN30_RS07860 (GTN30_07840) | - | 1480127..1480366 (+) | 240 | WP_174804788.1 | DUF2759 domain-containing protein | - |
| GTN30_RS07865 (GTN30_07845) | - | 1480392..1480703 (-) | 312 | WP_086042736.1 | MTH1187 family thiamine-binding protein | - |
| GTN30_RS07870 (GTN30_07850) | - | 1480703..1481671 (-) | 969 | WP_164953587.1 | ROK family glucokinase | - |
| GTN30_RS07875 (GTN30_07855) | - | 1481668..1481859 (-) | 192 | WP_086042738.1 | YqgQ family protein | - |
| GTN30_RS07880 (GTN30_07860) | - | 1481864..1483312 (-) | 1449 | WP_164942284.1 | rhomboid family protein | - |
| GTN30_RS07885 (GTN30_07865) | - | 1483288..1483842 (-) | 555 | WP_164953588.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 37245.84 Da Isoelectric Point: 6.8834
>NTDB_id=412991 GTN30_RS07845 WP_138071469.1 1477958..1478929(-) (comGA) [Macrococcoides canis strain Epi0076A]
MEKLFNEIIEVAIIQSASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIQFNL
KDLRYNIRASTLPRSLGDEACVLRIIRQNFIDEYQTNDKILYNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAHQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINTVDLYQSINLIINQRLVRKKDGTGRLLAYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
MEKLFNEIIEVAIIQSASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIQFNL
KDLRYNIRASTLPRSLGDEACVLRIIRQNFIDEYQTNDKILYNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAHQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINTVDLYQSINLIINQRLVRKKDGTGRLLAYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
Nucleotide
Download Length: 972 bp
>NTDB_id=412991 GTN30_RS07845 WP_138071469.1 1477958..1478929(-) (comGA) [Macrococcoides canis strain Epi0076A]
ATGGAAAAGTTATTCAATGAAATAATAGAGGTAGCAATTATACAAAGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCAATTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGATCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGAATGACAAGATATTGTACAATCAAATAAAAAAATCAAGTGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAGGTTAATGTTAACGAAAAAGCAGAGATAAC
GTATCATACTGCGATAAAGGCAATCCTTAGATGTGACCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTTG
CACATCAAGTGATCAATGCAGGACTAAGCGGTCATCTTGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATACTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAAAAAGATGGGACGGGGCGTCTATTGGCCTATGAATTTTTAACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
ATGGAAAAGTTATTCAATGAAATAATAGAGGTAGCAATTATACAAAGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCAATTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGATCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGAATGACAAGATATTGTACAATCAAATAAAAAAATCAAGTGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAGGTTAATGTTAACGAAAAAGCAGAGATAAC
GTATCATACTGCGATAAAGGCAATCCTTAGATGTGACCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTTG
CACATCAAGTGATCAATGCAGGACTAAGCGGTCATCTTGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATACTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAAAAAGATGGGACGGGGCGTCTATTGGCCTATGAATTTTTAACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
49.39 |
100 |
0.502 |
| comGA | Staphylococcus aureus N315 |
49.39 |
100 |
0.502 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
38.037 |
100 |
0.384 |
| pilB | Glaesserella parasuis strain SC1401 |
34.012 |
100 |
0.362 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
34.513 |
100 |
0.362 |