Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GSY53_RS09985 Genome accession   NZ_CP047325
Coordinates   1945831..1946781 (+) Length   316 a.a.
NCBI ID   WP_003234491.1    Uniprot ID   A0AAE2SHG3
Organism   Bacillus subtilis strain GOT9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1940831..1951781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS09960 (GSY53_09960) rapC 1942290..1943438 (+) 1149 WP_003246686.1 response regulator aspartate phosphatase RapC Regulator
  GSY53_RS09965 (GSY53_09965) phrC 1943422..1943544 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  GSY53_RS09970 (GSY53_09970) yczM 1943644..1943733 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  GSY53_RS09975 (GSY53_09975) yczN 1943815..1943928 (-) 114 WP_003234495.1 YjcZ family sporulation protein -
  GSY53_RS09980 (GSY53_09980) thrD 1944082..1945446 (-) 1365 WP_003234493.1 aspartate kinase -
  GSY53_RS09985 (GSY53_09985) ceuB 1945831..1946781 (+) 951 WP_003234491.1 petrobactin ABC transporter permease YclN Machinery gene
  GSY53_RS09990 (GSY53_09990) yclO 1946774..1947721 (+) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  GSY53_RS09995 (GSY53_09995) yclP 1947715..1948473 (+) 759 WP_003234487.1 petrobactin ABC transporter ATP-binding protein YclP -
  GSY53_RS10000 (GSY53_10000) yclQ 1948495..1949448 (+) 954 WP_003234484.1 petrobactin ABC transporter substrate-binding protein YclQ -
  GSY53_RS10005 (GSY53_10005) cdaE 1949495..1950913 (-) 1419 WP_003234482.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34899.33 Da        Isoelectric Point: 9.9364

>NTDB_id=412710 GSY53_RS09985 WP_003234491.1 1945831..1946781(+) (ceuB) [Bacillus subtilis strain GOT9]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTVLLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=412710 GSY53_RS09985 WP_003234491.1 1945831..1946781(+) (ceuB) [Bacillus subtilis strain GOT9]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TTGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GGTCGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGTGCTGTTGGGAGCGGTTTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522

Multiple sequence alignment