Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   H6S61_RS06520 Genome accession   NZ_CP060047
Coordinates   1288376..1290370 (-) Length   664 a.a.
NCBI ID   WP_185891921.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2497-87     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1283376..1295370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS06500 (H6S61_06500) fbaA 1284310..1285386 (-) 1077 WP_011079477.1 class II fructose-bisphosphate aldolase -
  H6S61_RS06505 (H6S61_06505) - 1285536..1286696 (-) 1161 WP_130196225.1 phosphoglycerate kinase -
  H6S61_RS06510 (H6S61_06510) epd 1286847..1287887 (-) 1041 WP_011151184.1 erythrose-4-phosphate dehydrogenase -
  H6S61_RS06515 (H6S61_06515) - 1288088..1288324 (+) 237 WP_013571101.1 hypothetical protein -
  H6S61_RS06520 (H6S61_06520) recP/tkt 1288376..1290370 (-) 1995 WP_185891921.1 transketolase Machinery gene
  H6S61_RS06525 (H6S61_06525) metK 1290700..1291854 (+) 1155 WP_011079472.1 methionine adenosyltransferase -
  H6S61_RS06530 (H6S61_06530) - 1292108..1292902 (+) 795 WP_038941472.1 DUF2189 domain-containing protein -
  H6S61_RS06535 (H6S61_06535) - 1292976..1293482 (+) 507 WP_185891923.1 SprT family zinc-dependent metalloprotease -
  H6S61_RS06540 (H6S61_06540) - 1293583..1294278 (+) 696 WP_038941475.1 endonuclease -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 71808.07 Da        Isoelectric Point: 5.0683

>NTDB_id=412709 H6S61_RS06520 WP_185891921.1 1288376..1290370(-) (recP/tkt) [Vibrio vulnificus strain 2497-87]
MPSRKHLANAIRALSMDGVQKANSGHPGAPMGMADIAEVLWRGHLNHNPSNPEWADRDRFVLSNGHGSMLIYSLLHLSGY
ELSIDDLKNFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMAMAEKALAAQFNKPGHDIVDHFTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGHVEGWFSDDTPKRFEAYGWHVIPAVDGHNAEAINAAIEAAKADPRPTLI
CTKTIIGFGSPNKSGSHDCHGAPLGAEEIAAAREFLGWEHPAFEIPADVYAEWDAKAAGAAKEAAWNAKFDAYAAAYPVE
AAEFKRRVNGELPAQWEEKANQIIADLQANPANIASRKASQNALEAFGKMLPEFMGGSADLAPSNLTMWSGSKSLEANDF
SGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKVQNIQVYTHDSIGLGEDGPTHQPVEQIA
SLRLTPNMSTWRPCDQVESAVAWKLAIERKDGPSALIFSRQNLAQQPRSAEQVADIAKGGYILKDSDGKPELILIATGSE
VELAVKAAEQLTAEGKKVRVVSMPATDTFDKQDAAYRESVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAP
ADQLFEMFGFTVENVVNTAKELLA

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=412709 H6S61_RS06520 WP_185891921.1 1288376..1290370(-) (recP/tkt) [Vibrio vulnificus strain 2497-87]
ATGCCTTCTCGTAAACATCTCGCTAATGCAATCCGCGCACTCAGCATGGACGGCGTACAAAAAGCAAACTCAGGCCACCC
AGGCGCACCTATGGGTATGGCGGACATCGCTGAAGTTCTTTGGCGTGGCCACCTAAACCACAACCCATCAAACCCAGAGT
GGGCTGATCGCGACCGTTTCGTACTCTCTAACGGCCACGGCTCGATGCTGATTTACTCGCTACTGCACTTAAGCGGTTAC
GAGCTTTCTATCGATGATCTGAAAAACTTCCGTCAATTGCATTCTAAGACTCCGGGCCACCCAGAATACGGCTACGCGCC
TGGTATCGAAACAACAACGGGCCCTCTAGGTCAAGGCATCACCAACGCGGTTGGTATGGCAATGGCTGAGAAAGCGCTCG
CAGCGCAGTTCAACAAACCTGGCCACGACATCGTTGACCACTTCACTTACGTGTTCATGGGTGATGGCTGTCTGATGGAA
GGTATCTCGCACGAGGCATGTTCTCTAGCGGGTACGCTAGGTCTTGGTAAACTGATTGCATTCTGGGATGACAACGGCAT
CTCTATCGACGGTCACGTTGAAGGCTGGTTTTCTGACGATACGCCTAAGCGTTTCGAAGCTTACGGCTGGCACGTTATCC
CAGCAGTGGATGGTCACAATGCTGAAGCGATCAACGCAGCAATTGAAGCCGCTAAAGCGGATCCTCGCCCAACTCTAATC
TGTACTAAAACTATCATCGGTTTTGGTTCACCAAACAAATCGGGTTCACACGACTGTCATGGTGCACCACTAGGTGCGGA
AGAAATTGCCGCAGCTCGTGAATTCCTAGGTTGGGAACACCCAGCATTTGAAATCCCTGCTGACGTTTACGCAGAGTGGG
ATGCAAAAGCAGCTGGCGCTGCAAAAGAAGCCGCTTGGAATGCGAAGTTTGATGCGTACGCAGCAGCGTACCCAGTCGAA
GCTGCGGAGTTTAAACGCCGCGTAAATGGCGAACTGCCAGCTCAGTGGGAAGAGAAAGCAAACCAAATCATTGCAGATCT
TCAAGCAAACCCAGCGAACATCGCATCACGTAAAGCATCGCAAAACGCGCTAGAAGCGTTTGGTAAAATGCTGCCAGAAT
TCATGGGCGGCTCTGCCGACCTAGCGCCTTCTAACCTCACCATGTGGTCGGGTTCTAAATCGCTAGAAGCAAACGACTTC
TCTGGTAACTACATCCACTACGGTGTACGTGAATTTGGTATGACTGCGATCATGAACGGTATCGCGCTACACGGCGGTTT
CGTACCTTACGGCGCAACCTTCCTGATGTTCATGGAATACGCACGTAACGCAATGCGTATGGCCGCTCTGATGAAAGTGC
AAAACATCCAAGTTTACACGCACGATTCTATCGGTCTTGGCGAAGATGGCCCTACTCACCAACCGGTTGAGCAAATCGCA
TCTCTGCGTCTAACGCCAAACATGAGCACATGGCGTCCATGTGACCAAGTGGAATCGGCAGTTGCATGGAAACTGGCGAT
TGAACGTAAAGACGGTCCATCGGCACTGATTTTCTCTCGTCAAAACCTAGCACAGCAACCACGCAGTGCTGAGCAAGTGG
CAGACATCGCCAAAGGTGGTTACATCCTCAAAGACAGCGATGGTAAGCCTGAGCTGATCCTAATCGCGACGGGTTCTGAA
GTTGAGCTAGCAGTGAAAGCGGCAGAACAACTAACCGCTGAAGGTAAGAAAGTGCGTGTGGTTTCAATGCCTGCTACTGA
TACTTTCGACAAGCAAGACGCGGCTTACCGTGAATCTGTATTGCCATCAGACGTAACGGCTCGTATCGCTATCGAAGCGG
GCATTGCCGACTTCTGGTACAAGTACGTTGGCTTCGACGGTCGCATCATCGGTATGACAACATTCGGTGAGTCTGCGCCA
GCTGACCAATTGTTCGAAATGTTTGGTTTCACTGTAGAAAACGTAGTGAACACAGCAAAAGAACTGCTAGCGTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, C-terminal domain (Transketolase_C)

(541-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.25

98.946

0.477

Multiple sequence alignment