Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | GTF71_RS01270 | Genome accession | NZ_CP047299 |
| Coordinates | 272058..272642 (+) | Length | 194 a.a. |
| NCBI ID | WP_000902745.1 | Uniprot ID | A0A0H6BVQ2 |
| Organism | Vibrio cholerae O1 biovar El Tor strain P27459 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 267058..277642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTF71_RS01255 (GTF71_01255) | oxyR | 267465..268358 (+) | 894 | WP_001025909.1 | DNA-binding transcriptional regulator OxyR | - |
| GTF71_RS01260 (GTF71_01260) | - | 268432..270909 (-) | 2478 | WP_000668733.1 | penicillin-binding protein 1A | - |
| GTF71_RS01265 (GTF71_01265) | pilM | 271052..272068 (+) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| GTF71_RS01270 (GTF71_01270) | pilN | 272058..272642 (+) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| GTF71_RS01275 (GTF71_01275) | pilO | 272635..273225 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GTF71_RS01280 (GTF71_01280) | pilP | 273215..273733 (+) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| GTF71_RS01285 (GTF71_01285) | pilQ | 273759..275474 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| GTF71_RS01290 (GTF71_01290) | aroK | 275661..276185 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| GTF71_RS01295 (GTF71_01295) | aroB | 276213..277298 (+) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21964.42 Da Isoelectric Point: 9.9503
>NTDB_id=412360 GTF71_RS01270 WP_000902745.1 272058..272642(+) (pilN) [Vibrio cholerae O1 biovar El Tor strain P27459]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQAGGAHNG
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQAGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=412360 GTF71_RS01270 WP_000902745.1 272058..272642(+) (pilN) [Vibrio cholerae O1 biovar El Tor strain P27459]
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCAGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAACAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCAGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAACAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
91.237 |
0.552 |