Detailed information NTG0412292

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GTF72_RS11560
• Genome accession: NZ_CP047295
• Coordinates: 2564876..2565883 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae C6706
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2559876..2570883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTF72_RS11550 (GTF72_11560)	cysM	2561040..2561927 (+)	888	WP_001279365.1	cysteine synthase CysM	-
GTF72_RS11555 (GTF72_11565)	mutS	2562195..2564783 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
GTF72_RS11560 (GTF72_11570)	rpoS	2564876..2565883 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
GTF72_RS11565 (GTF72_11575)	nlpD	2565957..2566892 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
GTF72_RS11570 (GTF72_11580)	-	2566892..2567518 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GTF72_RS11575 (GTF72_11585)	surE	2567511..2568263 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
GTF72_RS11580 (GTF72_11590)	truD	2568265..2569350 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
GTF72_RS11585 (GTF72_11595)	ispF	2569380..2569856 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GTF72_RS11590 (GTF72_11600)	ispD	2569853..2570551 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GTF72_RS11595 (GTF72_11605)	ftsB	2570548..2570832 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=412292 GTF72_RS11560 WP_000116737.1 2564876..2565883(-) (rpoS) [Vibrio cholerae C6706]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=412292 GTF72_RS11560 WP_000116737.1 2564876..2565883(-) (rpoS) [Vibrio cholerae C6706]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1