Detailed information NTG0412247

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GQY28_RS20950
• Genome accession: NZ_CP047285
• Coordinates: 4290846..4291646 (+)
• Length: 266 a.a.
• NCBI ID: WP_347075691.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Y3-10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4285846..4296646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQY28_RS20915 (GQY28_20495)	gspH	4286002..4286517 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
GQY28_RS20920 (GQY28_20500)	gspI	4286514..4286879 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
GQY28_RS20925 (GQY28_20505)	gspJ	4286876..4287472 (+)	597	WP_136846521.1	type II secretion system minor pseudopilin GspJ	-
GQY28_RS20930 (GQY28_20510)	gspK	4287469..4288455 (+)	987	WP_251715900.1	type II secretion system minor pseudopilin GspK	-
GQY28_RS20935 (GQY28_20515)	gspL	4288442..4289635 (+)	1194	WP_251715899.1	type II secretion system protein GspL	-
GQY28_RS20940 (GQY28_20520)	-	4289628..4290113 (+)	486	WP_025368434.1	type II secretion system protein M	-
GQY28_RS20945 (GQY28_20525)	-	4290103..4290849 (+)	747	WP_004145897.1	type II secretion system protein N	-
GQY28_RS20950 (GQY28_20530)	pilD	4290846..4291646 (+)	801	WP_347075691.1	A24 family peptidase	Machinery gene
GQY28_RS20955 (GQY28_20535)	hrpB	4291694..4294123 (-)	2430	WP_347075692.1	ATP-dependent helicase HrpB	-
GQY28_RS20960 (GQY28_20540)	thpR	4294196..4294732 (+)	537	WP_347075693.1	RNA 2',3'-cyclic phosphodiesterase	-
GQY28_RS20965 (GQY28_20545)	sfsA	4294732..4295448 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
GQY28_RS20970 (GQY28_20550)	dksA	4295611..4296066 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=412247 GQY28_RS20950 WP_347075691.1 4290846..4291646(+) (pilD) [Klebsiella pneumoniae strain Y3-10]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQLLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=412247 GQY28_RS20950 WP_347075691.1 4290846..4291646(+) (pilD) [Klebsiella pneumoniae strain Y3-10]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGTTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.678	98.12	0.429