Detailed information NTG0412198

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: F3109_RS21475
• Genome accession: NZ_CP047281
• Coordinates: 4375310..4376110 (+)
• Length: 266 a.a.
• NCBI ID: WP_017901157.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain N18-04101
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4370310..4381110

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F3109_RS21440 (F3109_21220)	gspH	4370463..4370978 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
F3109_RS21445 (F3109_21225)	gspI	4370975..4371340 (+)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
F3109_RS21450 (F3109_21230)	gspJ	4371337..4371933 (+)	597	WP_183472969.1	type II secretion system minor pseudopilin GspJ	-
F3109_RS21455 (F3109_21235)	gspK	4371930..4372910 (+)	981	WP_004204412.1	type II secretion system minor pseudopilin GspK	-
F3109_RS21460 (F3109_21240)	gspL	4372903..4374099 (+)	1197	WP_101994437.1	type II secretion system protein GspL	-
F3109_RS21465 (F3109_21245)	-	4374092..4374577 (+)	486	WP_101994436.1	type II secretion system protein M	-
F3109_RS21470 (F3109_21250)	-	4374567..4375295 (+)	729	WP_065878627.1	type II secretion system protein N	-
F3109_RS21475 (F3109_21255)	pilD	4375310..4376110 (+)	801	WP_017901157.1	A24 family peptidase	Machinery gene
F3109_RS21480 (F3109_21260)	hrpB	4376158..4378587 (-)	2430	WP_130946623.1	ATP-dependent helicase HrpB	-
F3109_RS21485 (F3109_21265)	thpR	4378660..4379196 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
F3109_RS21490 (F3109_21270)	sfsA	4379196..4379912 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
F3109_RS21495 (F3109_21275)	dksA	4380075..4380530 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29338.86 Da
• Isoelectric Point: 8.8894

>NTDB_id=412198 F3109_RS21475 WP_017901157.1 4375310..4376110(+) (pilD) [Klebsiella quasipneumoniae strain N18-04101]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=412198 F3109_RS21475 WP_017901157.1 4375310..4376110(+) (pilD) [Klebsiella quasipneumoniae strain N18-04101]
ATGACGACATTAGCCGCTTTATCGCTGCATTTCCCCCTTGTCTGGTATGGTTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATAGCATGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCACAGGTGCTGTTGTTCGCCTCGGCCAGCGGCCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCAGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-230)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425