Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   METOK_RS03890 Genome accession   NC_015636
Coordinates   790675..790893 (-) Length   72 a.a.
NCBI ID   WP_198005247.1    Uniprot ID   -
Organism   Methanothermococcus okinawensis IH1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 785675..795893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METOK_RS03870 (Metok_0759) - 786829..787788 (+) 960 WP_013866921.1 polyprenyl synthetase family protein -
  METOK_RS03875 (Metok_0760) comD 787900..788427 (-) 528 WP_013866922.1 sulfopyruvate decarboxylase subunit alpha -
  METOK_RS03880 (Metok_0761) - 788532..790361 (-) 1830 WP_013866923.1 DUF6541 family protein -
  METOK_RS03885 (Metok_0762) - 790390..790608 (-) 219 WP_013866924.1 class III signal peptide-containing protein -
  METOK_RS03890 (Metok_0763) MMJJ_RS05685 790675..790893 (-) 219 WP_198005247.1 class III signal peptide-containing protein Machinery gene
  METOK_RS03895 (Metok_0764) - 791020..791295 (-) 276 WP_048057870.1 transcriptional regulator -
  METOK_RS03900 (Metok_0765) - 791288..791833 (-) 546 WP_013866927.1 hypothetical protein -
  METOK_RS03910 (Metok_0766) mfnE 792234..792875 (+) 642 WP_013866928.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase -
  METOK_RS03915 (Metok_0767) - 792966..793130 (+) 165 WP_013866929.1 zinc finger domain-containing protein -
  METOK_RS03920 (Metok_0768) - 793191..793460 (+) 270 WP_013866930.1 elongation factor 1-beta -
  METOK_RS03925 (Metok_0769) - 793549..793773 (+) 225 WP_013866931.1 hypothetical protein -
  METOK_RS03930 (Metok_0770) - 793880..794341 (+) 462 WP_013866932.1 50S ribosomal protein L22 -
  METOK_RS03935 (Metok_0771) - 794428..795087 (+) 660 WP_013866933.1 30S ribosomal protein S3 -
  METOK_RS03940 (Metok_0772) rpmC 795111..795323 (+) 213 WP_013866934.1 50S ribosomal protein L29 -
  METOK_RS03945 (Metok_0773) yciH 795473..795781 (+) 309 WP_013866935.1 stress response translation initiation inhibitor YciH -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 7403.66 Da        Isoelectric Point: 10.6386

>NTDB_id=41219 METOK_RS03890 WP_198005247.1 790675..790893(-) (MMJJ_RS05685) [Methanothermococcus okinawensis IH1]
MKMLKKLTSKKGQVSMEIGILVAAAVAVAAIAAYFYAKNVKGAAKHSGEAANSSIGNMSTAANNYANKLSNI

Nucleotide


Download         Length: 219 bp        

>NTDB_id=41219 METOK_RS03890 WP_198005247.1 790675..790893(-) (MMJJ_RS05685) [Methanothermococcus okinawensis IH1]
ATGAAAATGTTAAAAAAATTAACCTCCAAAAAAGGACAAGTTTCAATGGAAATTGGTATTTTAGTTGCCGCCGCAGTTGC
CGTAGCTGCAATAGCTGCATACTTCTATGCAAAAAACGTTAAAGGTGCTGCAAAACATTCAGGAGAGGCAGCAAATAGTA
GCATAGGAAATATGAGTACTGCAGCAAATAACTATGCTAATAAACTGAGCAATATATAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

65.278

100

0.653
  epdE Methanococcus maripaludis strain DSM 2067

52.857

97.222

0.514

Multiple sequence alignment