Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   METOK_RS03640 Genome accession   NC_015636
Coordinates   732407..733561 (-) Length   384 a.a.
NCBI ID   WP_013866878.1    Uniprot ID   F8AL87
Organism   Methanothermococcus okinawensis IH1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 727407..738561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METOK_RS03615 (Metok_0710) mptA 727801..728742 (+) 942 WP_013866873.1 GTP cyclohydrolase MptA -
  METOK_RS03620 (Metok_0711) - 728896..730110 (+) 1215 WP_013866874.1 ATP-grasp domain-containing protein -
  METOK_RS03625 (Metok_0712) tfe 730107..730706 (+) 600 WP_013866875.1 transcription factor E -
  METOK_RS03630 (Metok_0713) - 730904..731518 (+) 615 WP_157198904.1 TIGR00295 family protein -
  METOK_RS03635 (Metok_0714) epdJ 731515..732402 (-) 888 WP_013866877.1 type II secretion system F family protein Machinery gene
  METOK_RS03640 (Metok_0715) epdK 732407..733561 (-) 1155 WP_013866878.1 type II secretion system F family protein Machinery gene
  METOK_RS03645 (Metok_0716) - 733576..736011 (-) 2436 WP_013866879.1 ATPase, T2SS/T4P/T4SS family -
  METOK_RS03650 (Metok_0717) - 736028..737038 (-) 1011 WP_013866880.1 transcription initiation factor IIB -
  METOK_RS03655 (Metok_0718) - 737204..737479 (-) 276 WP_013866881.1 Gar1/Naf1 family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 44125.28 Da        Isoelectric Point: 10.2144

>NTDB_id=41218 METOK_RS03640 WP_013866878.1 732407..733561(-) (epdK) [Methanothermococcus okinawensis IH1]
MKKSTHKSLRESYKQLRLKRTLLFRKIHTSMLKYYDELRKLIDNILYMDLKIGGRRRRIQKRRVSITHVKKLIEAHKEQD
IGLTEFYDVYVEKKPDVKVDVDIDLDELIEKSYFNMLNEYSKNLSYFVTHTKYLPSKIDFQYAGIRDVKVYFLKLMFVSM
GVGVIYFVNGVYDENILYGIINGVFASAILFIAGIFYPKIKLLLLSRGEIKIQILISILHMISSLNSGMSLQEAMKNISE
NPEYGIASFEFKNIIYDINRGGYSFKESLERAKIRTKIPLMKKLYAQLIISANKGGAQLLLKNLYNEVIRESISKIDSSK
FQISNLGNLVFGVGMILPFAGMLLSSLQGGMGFSGIINTTNLLLTKIAPMATIVFTIFIKMKIE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=41218 METOK_RS03640 WP_013866878.1 732407..733561(-) (epdK) [Methanothermococcus okinawensis IH1]
ATGAAAAAATCAACCCACAAATCACTGCGAGAATCATATAAACAATTGAGGTTAAAAAGGACATTATTATTTAGAAAAAT
ACATACCTCAATGTTAAAATATTATGATGAATTAAGGAAATTAATAGATAATATATTATATATGGATTTAAAAATTGGTG
GCAGAAGGAGGAGAATACAAAAAAGAAGAGTGTCAATAACACATGTAAAAAAACTAATAGAGGCTCATAAGGAACAGGAT
ATTGGACTTACGGAATTTTATGATGTATATGTTGAAAAAAAACCAGATGTGAAGGTTGATGTAGATATTGATTTGGATGA
ACTAATTGAAAAAAGTTATTTTAATATGCTTAATGAGTATTCTAAAAATCTTTCATATTTTGTGACCCATACTAAATATT
TACCTTCAAAAATAGACTTTCAATATGCAGGAATTAGGGATGTAAAAGTATATTTTCTAAAATTAATGTTTGTATCCATG
GGTGTTGGAGTAATATATTTTGTAAATGGAGTATATGATGAAAATATATTATATGGTATTATTAATGGAGTATTTGCAAG
TGCTATTTTATTCATTGCAGGTATATTTTATCCAAAAATAAAATTATTATTGTTATCTCGTGGGGAAATAAAGATTCAGA
TATTAATATCAATATTGCATATGATTTCCTCATTAAATTCTGGTATGTCATTGCAAGAAGCCATGAAAAATATTTCAGAA
AATCCTGAATATGGTATAGCCTCTTTTGAATTCAAAAATATAATTTATGATATTAATAGGGGAGGGTATAGTTTTAAAGA
ATCACTTGAAAGGGCTAAAATAAGAACTAAAATACCATTGATGAAAAAATTATACGCCCAACTTATAATATCTGCAAATA
AGGGGGGAGCCCAATTACTTTTAAAAAATTTATATAATGAGGTTATTAGAGAATCGATATCCAAAATTGATTCATCAAAA
TTTCAAATATCAAATCTAGGGAATCTTGTATTTGGGGTTGGAATGATACTTCCATTTGCAGGTATGCTATTATCCTCCCT
TCAAGGTGGCATGGGATTTAGCGGGATAATCAATACCACTAATTTATTATTAACAAAAATAGCTCCAATGGCTACTATAG
TATTTACTATATTTATCAAAATGAAAATAGAGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(219-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8AL87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanococcus maripaludis strain DSM 2067

56.156

86.719

0.487

Multiple sequence alignment