Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   METOK_RS03635 Genome accession   NC_015636
Coordinates   731515..732402 (-) Length   295 a.a.
NCBI ID   WP_013866877.1    Uniprot ID   F8AM14
Organism   Methanothermococcus okinawensis IH1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 726515..737402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METOK_RS03615 (Metok_0710) mptA 727801..728742 (+) 942 WP_013866873.1 GTP cyclohydrolase MptA -
  METOK_RS03620 (Metok_0711) - 728896..730110 (+) 1215 WP_013866874.1 ATP-grasp domain-containing protein -
  METOK_RS03625 (Metok_0712) tfe 730107..730706 (+) 600 WP_013866875.1 transcription factor E -
  METOK_RS03630 (Metok_0713) - 730904..731518 (+) 615 WP_157198904.1 TIGR00295 family protein -
  METOK_RS03635 (Metok_0714) epdJ 731515..732402 (-) 888 WP_013866877.1 type II secretion system F family protein Machinery gene
  METOK_RS03640 (Metok_0715) epdK 732407..733561 (-) 1155 WP_013866878.1 type II secretion system F family protein Machinery gene
  METOK_RS03645 (Metok_0716) - 733576..736011 (-) 2436 WP_013866879.1 ATPase, T2SS/T4P/T4SS family -
  METOK_RS03650 (Metok_0717) - 736028..737038 (-) 1011 WP_013866880.1 transcription initiation factor IIB -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32667.17 Da        Isoelectric Point: 9.3772

>NTDB_id=41217 METOK_RS03635 WP_013866877.1 731515..732402(-) (epdJ) [Methanothermococcus okinawensis IH1]
MVNIHEIYNYTIKRNIIILKRAGINLNEKSYFIIVVFLSFILPIVLKYIMHLSSKSTVILIVLYSLSILSIPSIMYESKI
EKFERNLPKALYVMILSLESGRSVIDAINEVINSGIKEVDVIFLKIVALMTEKKLSFEDSIILVSNSIDSKIFRQIGRLI
IENRKHGGELAEVLKTLAKTLEDLQNLKNQLLSVTANGLAVGLIIICGVIPATAGIIGGYLNAISQVAPNIAAVTPEQLA
KCMENVQIGTGIFGILFAVPIFGLKVNRMIITCAFCMTFGLASFYGVYYLAKILF

Nucleotide


Download         Length: 888 bp        

>NTDB_id=41217 METOK_RS03635 WP_013866877.1 731515..732402(-) (epdJ) [Methanothermococcus okinawensis IH1]
ATGGTGAATATTCACGAAATATACAATTATACTATAAAACGTAATATCATAATATTAAAACGGGCAGGTATAAATTTAAA
TGAAAAATCTTATTTTATAATAGTGGTATTTCTCTCATTCATACTGCCAATCGTATTAAAATATATTATGCATCTTAGTT
CAAAAAGCACTGTTATATTAATTGTATTATATAGTCTTTCCATATTATCCATTCCTAGTATAATGTATGAGTCTAAAATA
GAAAAATTCGAACGTAATTTACCAAAAGCCCTTTATGTAATGATACTATCATTAGAATCGGGTCGTTCAGTAATTGATGC
AATTAACGAAGTTATAAATAGTGGTATTAAAGAAGTAGATGTTATTTTTTTAAAGATTGTTGCATTAATGACTGAAAAAA
AACTAAGCTTTGAAGATTCTATAATACTGGTTTCAAACAGTATTGACTCAAAAATATTTCGGCAAATTGGAAGATTAATT
ATAGAAAATAGAAAACATGGCGGAGAATTAGCAGAGGTTCTTAAAACGCTTGCAAAAACGCTTGAAGATTTGCAAAATTT
GAAAAATCAATTACTTAGTGTTACGGCAAATGGTCTTGCAGTGGGATTAATAATAATATGTGGCGTTATTCCAGCAACAG
CTGGTATCATAGGTGGGTATCTAAATGCAATCTCCCAGGTAGCTCCAAATATCGCTGCGGTTACGCCGGAACAGCTTGCA
AAATGCATGGAAAATGTCCAGATAGGTACAGGAATTTTTGGTATTTTATTTGCCGTGCCAATATTTGGTTTAAAGGTAAA
TAGGATGATAATAACTTGTGCTTTCTGCATGACCTTTGGTTTAGCCTCATTCTATGGTGTATATTACCTTGCTAAAATAC
TGTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(92-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8AM14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

65.068

98.983

0.644

Multiple sequence alignment