Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   H4995_RS05160 Genome accession   NZ_CP059972
Coordinates   980978..981643 (+) Length   221 a.a.
NCBI ID   WP_002884392.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C220     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 975978..986643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4995_RS05130 (H4995_05130) htrA 976302..977720 (+) 1419 WP_002860448.1 serine protease HtrA -
  H4995_RS05135 (H4995_05135) - 977796..978470 (+) 675 WP_002853196.1 response regulator transcription factor -
  H4995_RS05140 (H4995_05140) - 978467..979714 (+) 1248 WP_002853241.1 ArsS family sensor histidine kinase -
  H4995_RS05150 (H4995_05150) - 979972..980220 (-) 249 WP_002853192.1 ribbon-helix-helix domain-containing protein -
  H4995_RS05155 (H4995_05155) - 980231..980830 (-) 600 Protein_1006 bacteriohemerythrin -
  H4995_RS05160 (H4995_05160) ciaR 980978..981643 (+) 666 WP_002884392.1 two-component system response regulator DccR Regulator
  H4995_RS05165 (H4995_05165) dccS 981636..982512 (+) 877 Protein_1008 two-component system sensor histidine kinase DccS -
  H4995_RS05170 (H4995_05170) - 982733..983389 (-) 657 WP_002857772.1 lactate utilization protein C -
  H4995_RS05175 (H4995_05175) - 983382..984821 (-) 1440 WP_002860571.1 LutB/LldF family L-lactate oxidation iron-sulfur protein -
  H4995_RS05180 (H4995_05180) - 984818..985558 (-) 741 WP_002860572.1 (Fe-S)-binding protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25569.28 Da        Isoelectric Point: 4.6834

>NTDB_id=412144 H4995_RS05160 WP_002884392.1 980978..981643(+) (ciaR) [Campylobacter jejuni strain C220]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGLRFEFTTQILYHNNKALALPSKEIK
LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=412144 H4995_RS05160 WP_002884392.1 980978..981643(+) (ciaR) [Campylobacter jejuni strain C220]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGCTTGAGTGAGATCATTGAAGAGTTTTTAAACGATGAGGGATA
TGAAGTATTTTTATGTGATAATGCGCAAGAAGCTTTAGATATGGCTTATGAAAGATATTTTGATCTTTGGATTTTAGATG
TAAAAGTTCCTTTAGGAGATGGATTTTCATTACTTAAAGAATTAAGAAAAAGCGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGGG
ATGGACTTAGGTTCGAATTTACTACACAAATTCTTTATCATAATAATAAAGCTTTGGCTTTGCCGAGTAAAGAGATTAAA
CTTTTGTCTTTATTGCTTAAAAATAAAAACAACTTTTTAAGCACAGAGAGAATTTTTGAAGAACTTTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGAGCTTATGTAAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAACCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362