Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H4986_RS01585 Genome accession   NZ_CP059971
Coordinates   294350..294898 (-) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 289350..299898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4986_RS01555 (H4986_01555) ctsT 289400..289702 (-) 303 WP_002853046.1 type II secretion system protein Machinery gene
  H4986_RS01560 (H4986_01560) proC 289699..290430 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  H4986_RS01565 (H4986_01565) fliW 290430..290819 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  H4986_RS01570 (H4986_01570) - 290980..291627 (+) 648 WP_011049880.1 outer membrane protein assembly factor BamD -
  H4986_RS01575 (H4986_01575) lon 291644..294019 (+) 2376 WP_002853487.1 endopeptidase La -
  H4986_RS01580 (H4986_01580) rpsR 294079..294339 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  H4986_RS01585 (H4986_01585) ssb 294350..294898 (-) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  H4986_RS01590 (H4986_01590) rpsF 294907..295284 (-) 378 WP_002853062.1 30S ribosomal protein S6 -
  H4986_RS01595 (H4986_01595) - 295371..296237 (-) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  H4986_RS01600 (H4986_01600) rseP 296230..297336 (-) 1107 WP_002934663.1 RIP metalloprotease RseP -
  H4986_RS01605 (H4986_01605) pgsA 297333..297869 (-) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H4986_RS01610 (H4986_01610) rdxA 297994..298599 (-) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  H4986_RS01615 (H4986_01615) - 298599..299219 (-) 621 WP_057044061.1 nitroreductase family protein -
  H4986_RS01620 (H4986_01620) - 299283..299708 (-) 426 WP_032580822.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=412076 H4986_RS01585 WP_002860190.1 294350..294898(-) (ssb) [Campylobacter jejuni strain C34]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=412076 H4986_RS01585 WP_002860190.1 294350..294898(-) (ssb) [Campylobacter jejuni strain C34]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363