Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   H4986_RS00015 Genome accession   NZ_CP059971
Coordinates   734..1399 (-) Length   221 a.a.
NCBI ID   WP_002884392.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C34     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..6399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4986_RS00010 (H4986_00010) dccS 1..741 (-) 741 Protein_0 two-component system sensor histidine kinase DccS -
  H4986_RS00015 (H4986_00015) ciaR 734..1399 (-) 666 WP_002884392.1 two-component system response regulator DccR Regulator
  H4986_RS00020 (H4986_00020) - 1547..2146 (+) 600 Protein_2 bacteriohemerythrin -
  H4986_RS00025 (H4986_00025) - 2157..2405 (+) 249 WP_002853192.1 ribbon-helix-helix domain-containing protein -
  H4986_RS00035 (H4986_00035) - 2663..3910 (-) 1248 WP_002853241.1 ArsS family sensor histidine kinase -
  H4986_RS00040 (H4986_00040) - 3907..4581 (-) 675 WP_002853196.1 response regulator transcription factor -
  H4986_RS00045 (H4986_00045) htrA 4657..6075 (-) 1419 WP_002860448.1 serine protease HtrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25569.28 Da        Isoelectric Point: 4.6834

>NTDB_id=412069 H4986_RS00015 WP_002884392.1 734..1399(-) (ciaR) [Campylobacter jejuni strain C34]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGLRFEFTTQILYHNNKALALPSKEIK
LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=412069 H4986_RS00015 WP_002884392.1 734..1399(-) (ciaR) [Campylobacter jejuni strain C34]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGCTTGAGTGAGATCATTGAAGAGTTTTTAAACGATGAGGGATA
TGAAGTATTTTTATGTGATAATGCGCAAGAAGCTTTAGATATGGCTTATGAAAGATATTTTGATCTTTGGATTTTAGATG
TAAAAGTTCCTTTAGGAGATGGATTTTCATTACTTAAAGAATTAAGAAAAAGCGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGGG
ATGGACTTAGGTTCGAATTTACTACACAAATTCTTTATCATAATAATAAAGCTTTGGCTTTGCCGAGTAAAGAGATTAAA
CTTTTGTCTTTATTGCTTAAAAATAAAAACAACTTTTTAAGCACAGAGAGAATTTTTGAAGAACTTTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGAGCTTATGTAAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAACCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362