Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GKS41_RS17400 Genome accession   NZ_CP047268
Coordinates   3496930..3497574 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain DH8043     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3491930..3502574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS17365 - 3493115..3493546 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  GKS41_RS17370 - 3493546..3493887 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  GKS41_RS17375 - 3493880..3495361 (+) 1482 WP_095273326.1 Na+/H+ antiporter subunit D -
  GKS41_RS17380 - 3495367..3495843 (+) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  GKS41_RS17385 - 3495843..3496127 (+) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  GKS41_RS17390 mnhG 3496111..3496485 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  GKS41_RS17395 - 3496525..3496908 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  GKS41_RS17400 comA 3496930..3497574 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  GKS41_RS17405 comP 3497655..3499949 (-) 2295 WP_159354531.1 histidine kinase Regulator
  GKS41_RS17410 comX 3499961..3500125 (-) 165 WP_007613432.1 competence pheromone ComX -
  GKS41_RS17415 - 3500125..3501036 (-) 912 WP_022553710.1 polyprenyl synthetase family protein -
  GKS41_RS17420 degQ 3501188..3501328 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  GKS41_RS17425 - 3501793..3502134 (+) 342 WP_021495366.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=412036 GKS41_RS17400 WP_014418762.1 3496930..3497574(-) (comA) [Bacillus velezensis strain DH8043]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=412036 GKS41_RS17400 WP_014418762.1 3496930..3497574(-) (comA) [Bacillus velezensis strain DH8043]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment