Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GKS41_RS10555 Genome accession   NZ_CP047268
Coordinates   2097532..2098431 (+) Length   299 a.a.
NCBI ID   WP_060561696.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2092532..2103431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS10535 - 2093222..2094925 (+) 1704 WP_159354158.1 glycosyl transferase -
  GKS41_RS10540 - 2094922..2095203 (+) 282 WP_061861456.1 FlhB-like flagellar biosynthesis protein -
  GKS41_RS10545 sucC 2095378..2096535 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  GKS41_RS10550 sucD 2096564..2097466 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  GKS41_RS10555 dprA 2097532..2098431 (+) 900 WP_060561696.1 DNA-processing protein DprA Machinery gene
  GKS41_RS10560 topA 2098613..2100688 (+) 2076 WP_014417765.1 type I DNA topoisomerase -
  GKS41_RS10565 trmFO 2100753..2102060 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GKS41_RS10570 xerC 2102135..2103052 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32854.97 Da        Isoelectric Point: 7.8285

>NTDB_id=412008 GKS41_RS10555 WP_060561696.1 2097532..2098431(+) (dprA) [Bacillus velezensis strain DH8043]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHSLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=412008 GKS41_RS10555 WP_060561696.1 2097532..2098431(+) (dprA) [Bacillus velezensis strain DH8043]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATTCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATCACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCATATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Legionella pneumophila strain ERS1305867

40.426

94.314

0.381
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368

Multiple sequence alignment