Detailed information    

insolico Bioinformatically predicted

Overview


Name   mecA   Type   Regulator
Locus tag   GKS41_RS08170 Genome accession   NZ_CP047268
Coordinates   1602382..1603038 (+) Length   218 a.a.
NCBI ID   WP_003155032.1    Uniprot ID   I2C3J8
Organism   Bacillus velezensis strain DH8043     
Function   degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context


Location: 1597382..1608038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS08145 oppF 1597911..1598828 (+) 918 WP_014417419.1 oligopeptide ABC transporter ATP-binding protein OppF -
  GKS41_RS08150 - 1598935..1600122 (+) 1188 Protein_1563 putative glycoside hydrolase -
  GKS41_RS08155 - 1600240..1600818 (+) 579 WP_007409110.1 GNAT family N-acetyltransferase -
  GKS41_RS08160 spx 1600997..1601392 (+) 396 WP_003155034.1 transcriptional regulator Spx -
  GKS41_RS08165 - 1601450..1602106 (-) 657 WP_014417421.1 TerC family protein -
  GKS41_RS08170 mecA 1602382..1603038 (+) 657 WP_003155032.1 adaptor protein MecA Regulator
  GKS41_RS08175 - 1603190..1604350 (+) 1161 WP_159354008.1 competence protein CoiA family protein -
  GKS41_RS08180 pepF 1604578..1606407 (+) 1830 WP_094296111.1 oligoendopeptidase F Regulator
  GKS41_RS19745 - 1606445..1606612 (-) 168 WP_003155026.1 hypothetical protein -
  GKS41_RS08185 spxH 1606898..1607800 (-) 903 WP_003155024.1 protease adaptor protein SpxH -

Sequence


Protein


Download         Length: 218 a.a.        Molecular weight: 25964.75 Da        Isoelectric Point: 4.1143

>NTDB_id=412001 GKS41_RS08170 WP_003155032.1 1602382..1603038(+) (mecA) [Bacillus velezensis strain DH8043]
MEIERINEHTVKFYMSYGDIEDRGFDREEIWYNRERSEELFWEVMDEVHDEEEFAVEGPLWIQVQALDKGLEIIVTKAQL
SKDGQKLELPIPEDKKQEPADENLDALLDDFQKEEQAESREDKEQKLQFTLRFDDFEDLISLSKLNLNGIKTTLYSFEDR
YYLYADFYEQTDEEVENQLSILLEYAHESSVSIHRLEEYGKLVIADHALYTIKKHFAS

Nucleotide


Download         Length: 657 bp        

>NTDB_id=412001 GKS41_RS08170 WP_003155032.1 1602382..1603038(+) (mecA) [Bacillus velezensis strain DH8043]
ATGGAAATAGAAAGAATTAATGAGCATACTGTAAAATTTTATATGTCTTATGGTGATATTGAAGATCGCGGTTTTGACAG
AGAAGAAATCTGGTACAATCGCGAGCGCAGTGAAGAACTGTTCTGGGAAGTCATGGATGAAGTGCATGATGAAGAAGAAT
TCGCTGTCGAGGGTCCTCTTTGGATTCAGGTTCAGGCATTGGACAAAGGACTGGAAATAATCGTAACAAAAGCCCAGCTT
TCCAAGGACGGACAAAAACTCGAACTGCCGATCCCGGAAGATAAAAAACAAGAGCCGGCAGATGAAAATCTCGATGCTTT
ACTTGATGATTTCCAGAAAGAAGAGCAGGCCGAGAGCCGGGAAGATAAGGAGCAAAAGCTTCAGTTCACTTTGCGGTTCG
ATGATTTTGAGGATCTCATCTCGCTATCAAAATTGAATCTTAACGGAATTAAAACGACCCTGTATTCGTTTGAAGACCGA
TATTATTTATATGCAGATTTTTATGAGCAAACTGATGAAGAGGTTGAAAATCAGCTAAGCATCCTGTTGGAGTACGCGCA
CGAATCATCAGTCAGCATTCACCGTCTTGAAGAATACGGCAAATTGGTGATCGCTGATCATGCGTTATATACAATAAAAA
AACACTTTGCATCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB I2C3J8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Bacillus subtilis subsp. subtilis str. 168

89.45

100

0.895


Multiple sequence alignment