Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   GKS41_RS08060 Genome accession   NZ_CP047268
Coordinates   1580119..1581072 (+) Length   317 a.a.
NCBI ID   WP_072177123.1    Uniprot ID   A0AAP5QP93
Organism   Bacillus velezensis strain DH8043     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575119..1586072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS08035 argF 1576937..1577908 (+) 972 WP_159354005.1 ornithine carbamoyltransferase -
  GKS41_RS08040 - 1577984..1578163 (+) 180 WP_003155070.1 YjzC family protein -
  GKS41_RS08045 - 1578200..1578385 (-) 186 WP_007409129.1 YjzD family protein -
  GKS41_RS08050 - 1578646..1579379 (+) 734 Protein_1543 hypothetical protein -
  GKS41_RS08055 - 1579462..1580028 (+) 567 WP_017417444.1 hypothetical protein -
  GKS41_RS08060 med 1580119..1581072 (+) 954 WP_072177123.1 BMP family ABC transporter substrate-binding protein Regulator
  GKS41_RS08065 comZ 1581085..1581276 (+) 192 WP_003155061.1 ComZ family protein Regulator
  GKS41_RS08070 - 1581305..1581523 (-) 219 WP_007409123.1 hypothetical protein -
  GKS41_RS08075 - 1581690..1582628 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  GKS41_RS08080 fabF 1582651..1583889 (+) 1239 WP_012117277.1 beta-ketoacyl-ACP synthase II -
  GKS41_RS08085 - 1583973..1584758 (+) 786 WP_159354006.1 DUF2268 domain-containing protein -
  GKS41_RS08090 - 1584932..1585918 (+) 987 WP_033574515.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35330.94 Da        Isoelectric Point: 4.6686

>NTDB_id=411997 GKS41_RS08060 WP_072177123.1 1580119..1581072(+) (med) [Bacillus velezensis strain DH8043]
MITRLVMTFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=411997 GKS41_RS08060 WP_072177123.1 1580119..1581072(+) (med) [Bacillus velezensis strain DH8043]
TTGATCACCAGGCTTGTCATGACCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATTTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACAGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAACAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.233

100

0.782

Multiple sequence alignment