Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   GKS41_RS04340 Genome accession   NZ_CP047268
Coordinates   864725..864844 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain DH8043     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 859725..869844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS04325 - 861337..862020 (+) 684 WP_014416901.1 response regulator transcription factor -
  GKS41_RS04330 - 862007..863434 (+) 1428 WP_100261600.1 sensor histidine kinase -
  GKS41_RS04335 rapC 863593..864741 (+) 1149 WP_159353775.1 tetratricopeptide repeat protein Regulator
  GKS41_RS04340 phrC 864725..864844 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  GKS41_RS04345 - 864995..865105 (-) 111 WP_395606235.1 YjcZ family sporulation protein -
  GKS41_RS04350 - 865185..866549 (-) 1365 WP_159353777.1 aspartate kinase -
  GKS41_RS04355 ceuB 866963..867916 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  GKS41_RS04360 - 867906..868853 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  GKS41_RS04365 - 868847..869605 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=411986 GKS41_RS04340 WP_003156334.1 864725..864844(+) (phrC) [Bacillus velezensis strain DH8043]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=411986 GKS41_RS04340 WP_003156334.1 864725..864844(+) (phrC) [Bacillus velezensis strain DH8043]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718

Multiple sequence alignment