Detailed information NTG0411985

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: GKS41_RS04335
• Genome accession: NZ_CP047268
• Coordinates: 863593..864741 (+)
• Length: 382 a.a.
• NCBI ID: WP_159353775.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain DH8043
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 858593..869741

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GKS41_RS04315	-	858993..859676 (-)	684	WP_022552585.1	ABC transporter ATP-binding protein	-
GKS41_RS04320	-	859691..861124 (-)	1434	WP_159353774.1	ABC transporter permease	-
GKS41_RS04325	-	861337..862020 (+)	684	WP_014416901.1	response regulator transcription factor	-
GKS41_RS04330	-	862007..863434 (+)	1428	WP_100261600.1	sensor histidine kinase	-
GKS41_RS04335	rapC	863593..864741 (+)	1149	WP_159353775.1	tetratricopeptide repeat protein	Regulator
GKS41_RS04340	phrC	864725..864844 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
GKS41_RS04345	-	864995..865105 (-)	111	WP_395606235.1	YjcZ family sporulation protein	-
GKS41_RS04350	-	865185..866549 (-)	1365	WP_159353777.1	aspartate kinase	-
GKS41_RS04355	ceuB	866963..867916 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
GKS41_RS04360	-	867906..868853 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
GKS41_RS04365	-	868847..869605 (+)	759	WP_022552588.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45566.81 Da
• Isoelectric Point: 4.9323

>NTDB_id=411985 GKS41_RS04335 WP_159353775.1 863593..864741(+) (rapC) [Bacillus velezensis strain DH8043]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKELLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=411985 GKS41_RS04335 WP_159353775.1 863593..864741(+) (rapC) [Bacillus velezensis strain DH8043]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAATTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGAGCTTCTCGATTATTATGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGATTGTGCTACTACAATCAGGACCGCATCGGT
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	81.937	100	0.819
rapF	Bacillus subtilis subsp. subtilis str. 168	56.842	99.476	0.565