Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GKS41_RS04155 Genome accession   NZ_CP047268
Coordinates   805770..806207 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 800770..811207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS04130 - 801788..802924 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  GKS41_RS04135 - 802939..803375 (+) 437 Protein_785 RDD family protein -
  GKS41_RS04140 - 803492..803770 (+) 279 WP_263612330.1 YckD family protein -
  GKS41_RS04145 - 803874..805310 (+) 1437 WP_159353761.1 glycoside hydrolase family 1 protein -
  GKS41_RS04150 nin/comJ 805351..805749 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  GKS41_RS04155 nucA/comI 805770..806207 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GKS41_RS04160 hxlB 806538..807095 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  GKS41_RS04165 hxlA 807092..807727 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  GKS41_RS04170 - 807959..808321 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=411984 GKS41_RS04155 WP_003156588.1 805770..806207(-) (nucA/comI) [Bacillus velezensis strain DH8043]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=411984 GKS41_RS04155 WP_003156588.1 805770..806207(-) (nucA/comI) [Bacillus velezensis strain DH8043]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment