Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   GKS41_RS04150 Genome accession   NZ_CP047268
Coordinates   805351..805749 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 800351..810749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS04125 - 800521..801723 (+) 1203 WP_159353760.1 GTP-binding protein -
  GKS41_RS04130 - 801788..802924 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  GKS41_RS04135 - 802939..803375 (+) 437 Protein_785 RDD family protein -
  GKS41_RS04140 - 803492..803770 (+) 279 WP_263612330.1 YckD family protein -
  GKS41_RS04145 - 803874..805310 (+) 1437 WP_159353761.1 glycoside hydrolase family 1 protein -
  GKS41_RS04150 nin/comJ 805351..805749 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  GKS41_RS04155 nucA/comI 805770..806207 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GKS41_RS04160 hxlB 806538..807095 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  GKS41_RS04165 hxlA 807092..807727 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  GKS41_RS04170 - 807959..808321 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=411983 GKS41_RS04150 WP_007609299.1 805351..805749(-) (nin/comJ) [Bacillus velezensis strain DH8043]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=411983 GKS41_RS04150 WP_007609299.1 805351..805749(-) (nin/comJ) [Bacillus velezensis strain DH8043]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCTATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment